Gene: Zm00001eb127930

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb127930
  • Transcript Identifier Zm00001eb127930_T002
  • Gene Type Coding gene
  • Location 3 : 37880242-37886911 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb127930_T002
  • pid Zm00001eb127930_P002
  • uniprot A0A3L6FJC2
  • uniprot A0A1D6MQ07
  • uniprot A0A1D6MQ19
  • uniprot A0A1D6MQ25
  • uniprot A0A1D6MQ26
  • uniprot A0A1D6MQ23
  • uniprot A0A1D6MQ12
  • uniprot A0A1D6MQ24
  • uniprot A0A1D6MQ10
  • uniprot A0A1D6MQ11
  • uniprot A0A1D6MQ22
  • uniprot A0A1D6MQ20
  • entrez 103649964
  • refseq XP_008673878.1
  • refseq XM_008675656.1
  • V4_identifier Zm00001d040311

Descriptions

  • Description Zm00001e017277
  • Description 5'-3' exoribonuclease 3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000956
IBA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G75660
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G75660
GO:0000967
ISO
PLAZA Integrative OrthologyrRNA 5'-end processing AT1G75660
GO:0071035
ISO
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process AT1G75660
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Cre06.g280050
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004534
IBA
IEA
GOA Database5'-3' exoribonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041412 Xrn1, helical domain
IPR004859 Putative 5-3 exonuclease
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR027073 5'-3' exoribonuclease
Mapman id Description
16.4.3.2 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.exoribonuclease (RAT1/XRN2)