Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.2e-144 515.0 249 100.0
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.5e-130 468.0 249 90.0
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-128 462.6 249 88.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.2e-128 460.7 249 88.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-127 459.5 247 87.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-125 453.4 249 87.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-125 453.4 247 87.4
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.1e-123 445.3 247 86.2
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 6.8e-94 347.8 245 68.2
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.6e-90 336.7 246 67.1
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 2.0e-90 336.3 248 65.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.3e-89 333.6 242 66.5
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.3e-89 332.8 246 63.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.3e-89 332.8 240 68.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.0e-89 331.6 253 64.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.0e-89 331.6 253 64.4
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.9e-88 329.7 243 67.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 9.5e-88 327.4 240 66.2
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.5e-88 327.4 249 65.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.5e-88 327.4 246 66.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.2e-87 327.0 247 63.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.6e-87 326.6 249 64.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.6e-87 325.5 246 63.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 6.2e-87 324.7 240 65.8
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 6.2e-87 324.7 246 65.9
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.8e-86 323.2 235 67.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.8e-86 323.2 240 66.2
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.8e-86 323.2 243 65.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.8e-86 321.2 237 62.9
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 8.9e-86 320.9 246 65.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.2e-85 320.5 240 65.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.0e-85 319.7 243 63.8
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.0e-85 319.7 236 67.4
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.6e-85 319.3 239 63.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.8e-85 318.2 243 65.0
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.8e-85 318.2 243 64.2
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.9e-84 315.8 235 65.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.1e-83 313.9 240 64.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.1e-83 313.9 241 63.1
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.4e-83 312.8 247 62.3
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.2e-83 312.4 247 61.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-82 310.1 247 61.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 3.5e-82 308.9 239 61.9
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 4.6e-82 308.5 243 63.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 6.6e-81 304.7 253 62.1
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.3e-80 302.4 240 59.6
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.3e-80 302.0 247 64.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 7.3e-80 301.2 239 60.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.6e-79 300.1 234 62.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.8e-79 299.3 242 60.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.7e-79 298.5 247 59.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.2e-79 298.1 242 61.2
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.2e-79 298.1 242 61.2
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.1e-79 297.7 249 60.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.1e-78 297.4 249 56.6
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.4e-78 296.2 246 57.3
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.0e-78 295.4 242 59.9
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.0e-78 295.4 235 62.6
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 4.0e-78 295.4 241 59.3
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 5.2e-78 295.0 253 60.9
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 6.8e-78 294.7 239 58.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 8.9e-78 294.3 239 59.0
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-77 293.5 241 59.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.6e-77 292.7 243 59.3
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.6e-77 292.7 241 61.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-77 292.0 247 58.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 4.4e-77 292.0 260 57.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.8e-77 291.6 239 60.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.6e-77 291.2 235 61.7
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.2e-76 289.7 235 62.1
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-76 288.9 246 57.3
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 4.9e-76 288.5 235 61.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.9e-76 288.5 240 61.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 6.4e-76 288.1 229 62.9
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 8.4e-76 287.7 240 58.3
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.4e-75 287.0 242 58.7
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.4e-75 287.0 235 61.3
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.2e-74 283.9 234 59.8
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.7e-74 282.7 239 58.2
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.7e-74 282.7 237 60.3
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.7e-74 282.7 237 60.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 7.8e-74 281.2 248 56.5
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.0e-73 280.8 242 58.7
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.3e-73 279.6 241 60.6
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.1e-72 277.3 263 55.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-72 277.3 247 58.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.3e-72 275.4 200 65.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.6e-72 275.0 244 55.7
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.6e-72 275.0 240 58.8
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 5.6e-72 275.0 234 57.7
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 5.6e-72 275.0 243 58.0
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.8e-71 272.7 240 56.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.8e-71 272.7 237 58.6
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.6e-71 272.3 239 56.5
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 3.6e-71 272.3 239 55.6
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 4.7e-71 271.9 239 56.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.2e-71 271.6 241 56.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.2e-71 271.6 241 58.1
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.1e-71 271.2 236 56.4
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.1e-70 270.8 239 55.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.1e-70 270.8 240 55.4
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.4e-70 270.4 239 54.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.8e-70 270.0 241 55.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-70 270.0 239 54.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.4e-70 269.6 234 54.7
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.0e-70 268.9 248 57.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-70 268.1 238 56.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-70 268.1 238 56.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.2e-69 267.3 239 55.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.6e-69 266.2 244 54.1
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.8e-69 265.0 245 54.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 7.6e-69 264.6 244 53.3
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.2e-68 263.1 235 56.2
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.2e-68 263.1 237 54.9
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.2e-68 263.1 237 54.9
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.8e-68 262.3 239 55.2
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.8e-68 262.3 239 55.2
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.8e-68 262.3 240 52.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.9e-68 261.9 239 53.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 8.4e-68 261.2 238 54.2
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.4e-67 259.6 239 55.2
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 7.1e-67 258.1 245 52.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-66 257.3 217 59.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-66 256.5 247 53.8
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.1e-66 256.5 249 53.0
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-66 256.1 238 53.8
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.5e-66 255.8 205 60.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.5e-66 255.8 226 56.6
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.6e-66 255.4 209 59.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.0e-65 254.2 236 51.7
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.9e-65 252.3 224 57.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 6.6e-65 251.5 239 52.7
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-64 250.4 242 53.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.5e-64 250.4 245 54.3
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 5.6e-64 248.4 237 54.4
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.3e-64 248.1 242 52.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 7.3e-64 248.1 235 54.9
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-63 246.9 243 54.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.6e-63 245.7 232 50.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-63 245.4 209 57.4
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-61 240.0 217 53.9
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.5e-61 238.8 235 53.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 3.8e-60 235.7 255 50.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-59 234.2 211 54.0
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.6e-58 230.3 238 52.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.3e-57 226.5 231 50.2
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 8.7e-57 224.6 259 47.9
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 2.8e-55 219.5 240 50.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-54 217.6 245 50.2
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.5e-53 213.8 224 52.7
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.0e-53 213.4 239 46.4
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 5.8e-53 211.8 185 57.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.2e-51 205.7 158 64.6
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.1e-48 197.6 164 59.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.1e-47 193.4 163 54.6
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.1e-47 193.4 174 57.5
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.8e-47 193.0 269 40.5
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-47 192.2 246 43.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-44 184.1 157 59.2
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 7.1e-43 178.3 263 39.2
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.7e-40 168.7 209 47.4
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.9e-36 156.4 127 59.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-35 153.7 200 45.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.7e-32 141.4 192 40.6
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.2e-31 140.2 116 57.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.4e-29 132.9 98 64.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 7.7e-29 131.7 121 56.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.2e-27 126.3 107 55.1
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.6e-26 124.0 142 50.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.1e-26 123.6 147 45.6
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.2e-23 113.6 117 50.4
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.8e-23 113.2 93 57.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 8.2e-23 111.7 167 38.9
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 3.8e-20 102.8 132 42.4
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.4e-19 100.9 89 56.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 6.1e-18 95.5 88 51.1
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 5.2e-17 92.4 96 50.0
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.0e-16 90.5 190 30.5
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.3e-16 89.7 80 53.8
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 7.4e-16 88.6 72 59.7
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 4.1e-14 82.8 179 29.6
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-11 73.6 60 60.0
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.7e-10 70.1 264 25.4
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 6.3e-07 58.9 60 50.0
Zm00001eb030490 Zea mays HOM05D028996 ORTHO05D004375 1.1e-06 58.2 59 49.2


User provided reference genes

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