Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.1e-219 765.4 383 100.0
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.1e-207 726.5 381 94.0
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-206 722.6 381 92.9
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.6e-204 714.1 381 93.2
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.6e-204 714.1 381 93.2
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.1e-203 710.7 381 92.7
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-202 709.5 381 92.7
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.0e-189 666.8 381 85.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 9.5e-188 660.2 381 84.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-183 646.0 381 85.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 4.9e-168 594.7 381 75.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 6.4e-168 594.3 381 75.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.6e-166 589.7 381 73.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.3e-165 586.6 381 74.0
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 6.6e-165 584.3 380 73.7
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.1e-164 583.6 381 73.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 4.3e-164 581.6 381 74.5
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.6e-163 579.7 381 73.5
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.6e-163 578.6 381 74.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 8.1e-163 577.4 381 72.2
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 8.1e-163 577.4 381 72.2
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-162 577.0 377 74.0
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.1e-162 577.0 381 71.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.0e-162 575.1 381 72.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 9.0e-162 573.9 388 72.2
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.2e-161 573.5 381 73.0
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.5e-161 573.2 381 71.7
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 4.5e-161 571.6 381 71.9
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 5.8e-161 571.2 377 72.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 9.9e-161 570.5 381 72.7
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 9.9e-161 570.5 381 71.1
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.7e-160 569.7 403 69.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-160 569.3 376 73.7
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.2e-160 569.3 381 70.9
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.9e-159 566.2 381 70.9
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.9e-159 566.2 381 70.9
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.4e-159 565.8 381 72.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.2e-159 565.5 381 70.9
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.2e-159 565.5 364 74.7
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.2e-159 565.1 380 70.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.1e-159 564.3 381 72.2
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 7.1e-159 564.3 381 71.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.9e-157 558.5 381 69.0
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.1e-157 558.1 381 69.6
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 6.7e-157 557.8 381 68.8
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.7e-157 557.4 382 70.7
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.1e-156 557.0 438 63.7
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.1e-156 557.0 381 70.9
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.9e-156 556.2 381 69.6
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.5e-156 555.8 377 70.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.5e-156 555.8 381 70.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.5e-156 555.8 381 69.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.6e-156 554.7 382 70.4
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 5.6e-156 554.7 382 70.4
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.6e-156 554.7 382 70.2
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 7.4e-156 554.3 381 68.5
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.6e-155 553.1 381 68.8
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.4e-154 550.1 382 69.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.9e-154 547.7 382 69.6
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 9.0e-154 547.4 382 69.1
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.0e-153 546.2 381 68.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.6e-153 545.8 381 69.0
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.5e-153 545.0 382 69.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 4.5e-153 545.0 382 69.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.5e-153 545.0 381 67.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-152 543.5 377 68.2
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.2e-152 542.7 381 68.0
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 8.4e-152 540.8 378 66.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.9e-151 539.7 381 69.3
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 7.1e-151 537.7 377 66.6
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.8e-149 533.1 387 68.2
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.3e-149 532.7 377 67.9
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 3.9e-149 531.9 377 69.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.1e-149 531.6 381 66.1
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.9e-148 529.6 381 66.1
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.5e-148 529.3 381 66.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 6.2e-147 524.6 391 66.0
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 9.0e-146 520.8 346 72.3
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.8e-145 518.1 381 66.4
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 5.0e-144 515.0 386 65.8
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.1e-143 513.8 381 63.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.4e-143 513.5 381 62.7
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.2e-143 511.9 381 63.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 7.2e-143 511.1 381 62.2
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.1e-142 509.6 381 62.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.3e-141 506.9 382 61.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.1e-140 503.8 377 62.3
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.1e-140 503.8 377 62.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.1e-140 503.8 381 61.4
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 3.3e-140 502.3 377 62.1
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 9.7e-140 500.7 377 62.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 2.8e-139 499.2 377 63.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.8e-136 488.8 364 62.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.5e-132 476.1 349 68.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 9.7e-132 474.2 381 61.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.3e-128 463.8 364 62.1
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.0e-125 454.1 381 60.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 8.8e-125 451.1 376 60.1
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 4.4e-124 448.7 335 65.1
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.1e-122 442.2 382 57.6
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 5.9e-121 438.3 382 58.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 9.4e-119 431.0 276 75.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 8.0e-118 427.9 407 54.8
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.7e-117 424.9 340 62.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.7e-116 421.0 276 74.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 4.8e-115 418.7 382 53.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 7.0e-114 414.8 276 71.7
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 3.2e-111 406.0 381 51.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 9.8e-108 394.4 382 50.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.4e-98 364.0 381 48.3
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.1e-98 362.5 382 51.6
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.1e-98 362.5 378 47.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 5.0e-96 355.5 274 63.9
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.8e-93 347.1 276 60.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.1e-87 327.8 376 43.9
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.8e-77 293.9 333 43.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 6.4e-75 285.4 364 44.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.3e-71 273.1 149 85.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 7.1e-66 255.4 164 76.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.2e-62 244.6 211 57.3
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 6.8e-61 238.8 153 74.5
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.8e-51 206.5 135 68.9
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 8.4e-51 205.3 164 61.6
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.3e-39 166.4 187 50.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-38 164.9 127 63.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.6e-38 164.5 197 44.7
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.7e-35 154.5 437 28.6
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.3e-27 128.3 97 59.8
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.6e-25 121.3 92 60.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-19 100.9 58 75.9
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.0e-16 92.0 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.0e-16 90.5 81 51.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.9e-16 90.1 64 65.6
Cfa025796 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.4e-13 80.9 377 24.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 5.9e-12 76.3 50 72.0
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-11 74.3 50 68.0
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.9e-11 73.9 55 60.0
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 6.5e-11 72.8 161 32.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 9.4e-10 68.9 47 70.2
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 9.4e-10 68.9 48 68.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-09 68.6 40 72.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.4e-08 65.1 50 70.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.4e-07 60.1 80 40.0
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 3.7e-06 57.0 64 46.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.3e-06 56.2 35 77.1


User provided reference genes

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