Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 5.3e-173 610.9 309 100.0
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.0e-159 565.8 297 94.6
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-159 565.8 297 94.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-159 565.8 297 94.6
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.6e-159 565.5 297 94.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.4e-159 564.7 297 94.3
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.1e-157 558.1 297 93.9
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-148 529.3 299 90.6
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.6e-137 491.9 297 81.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.0e-128 461.8 296 78.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 9.3e-125 450.7 297 76.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.7e-123 446.4 298 74.8
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.6e-121 439.9 297 75.1
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 2.8e-121 439.1 294 75.2
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.4e-120 436.0 299 72.2
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.7e-118 429.9 298 71.8
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.4e-117 426.8 298 73.2
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 9.3e-117 424.1 295 71.9
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.7e-116 422.5 299 71.6
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.5e-116 422.2 309 69.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.5e-116 422.2 298 71.8
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.6e-111 406.0 294 68.4
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.9e-110 402.5 307 66.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.4e-110 401.4 296 71.3
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 8.4e-110 401.0 309 66.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.4e-109 400.2 296 69.9
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 4.2e-109 398.7 296 69.9
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 5.4e-109 398.3 295 68.8
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.2e-108 397.1 296 68.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.2e-108 397.1 306 65.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.1e-108 396.4 292 71.2
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 3.5e-108 395.6 300 68.3
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.5e-108 395.6 294 68.7
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 7.9e-108 394.4 300 65.7
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 7.9e-108 394.4 297 68.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.8e-107 393.3 295 67.8
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.0e-107 392.5 299 65.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.7e-107 391.3 295 66.8
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 8.7e-107 391.0 294 67.3
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.5e-106 390.2 295 66.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.5e-106 390.2 310 65.2
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.5e-106 390.2 279 70.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.9e-106 389.8 294 66.3
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.5e-106 389.4 298 65.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.5e-106 389.4 299 66.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 3.3e-106 389.0 298 68.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.3e-106 389.0 298 66.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 4.3e-106 388.7 298 67.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.4e-106 387.9 295 67.1
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.8e-105 385.2 296 69.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.8e-105 385.2 292 67.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.8e-105 385.2 295 65.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.4e-104 383.6 310 64.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 4.0e-104 382.1 300 63.7
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 6.9e-104 381.3 297 65.7
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 9.0e-104 380.9 300 66.0
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 9.0e-104 380.9 297 64.6
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-103 379.8 297 64.0
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.0e-103 379.8 297 64.6
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 3.4e-103 379.0 295 65.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.3e-102 377.1 290 64.8
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.7e-102 376.7 305 63.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.2e-102 376.3 301 64.1
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.9e-102 375.9 292 63.7
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.8e-102 375.6 296 64.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 3.8e-102 375.6 303 63.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.9e-102 375.2 294 63.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.4e-101 373.6 294 63.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-101 373.2 295 65.4
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-101 372.5 296 66.2
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-101 372.5 296 66.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 9.3e-101 370.9 290 66.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.3e-101 370.9 301 63.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.9e-100 367.9 296 64.9
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.5e-98 362.8 294 62.2
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.3e-98 362.5 303 61.7
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 4.3e-98 362.1 318 60.7
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.2e-97 358.2 294 61.9
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 6.9e-96 354.8 319 58.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.2e-95 354.0 304 60.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.9e-94 349.4 295 59.3
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.9e-94 349.4 329 57.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.5e-94 348.2 299 60.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 9.3e-93 344.4 292 61.0
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.0e-91 340.9 331 57.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.3e-91 340.5 296 58.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 3.0e-91 339.3 283 60.1
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 6.7e-91 338.2 295 58.0
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.2e-89 333.2 296 57.1
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.2e-89 333.2 295 57.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.7e-89 332.4 295 57.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.7e-89 332.4 295 57.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.3e-89 331.6 318 55.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.2e-89 331.3 310 55.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.4e-88 330.5 308 56.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.4e-88 330.5 294 57.8
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.0e-87 326.6 334 54.8
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.7e-83 311.6 277 58.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 7.7e-79 298.1 295 55.3
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.1e-76 288.5 297 55.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 6.1e-76 288.5 283 53.7
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.3e-75 286.6 256 59.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-74 283.1 297 54.2
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 7.4e-74 281.6 302 49.7
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 9.7e-74 281.2 297 52.9
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 4.1e-72 275.8 290 49.0
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.2e-70 270.0 201 67.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-68 263.8 265 55.1
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.2e-61 239.6 307 44.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.1e-60 236.9 302 45.7
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-56 221.9 295 48.1
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.8e-51 204.9 155 64.5
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.3e-49 201.1 222 46.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 7.0e-48 195.3 249 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.3e-45 186.0 301 37.2
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-43 181.4 228 46.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 5.7e-42 175.6 180 58.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-40 171.4 132 62.9
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 4.3e-29 132.9 123 54.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.9e-25 119.4 90 65.6
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.1e-23 114.0 95 63.2
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.5e-23 113.2 75 69.3
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.1e-21 108.2 99 59.6
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.3e-21 106.3 80 63.8
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.6e-20 104.4 80 63.8
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.6e-20 103.2 125 40.8
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.1e-19 100.1 65 70.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.0e-19 99.8 69 68.1
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.8e-19 99.0 68 67.6
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.6e-18 95.5 67 71.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.9e-16 90.9 67 70.1
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.3e-13 80.1 45 82.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 9.6e-13 78.6 55 63.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.7e-12 76.3 62 59.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.7e-12 76.3 91 48.4
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 8.1e-12 75.5 39 82.1
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 5.2e-11 72.8 53 62.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.3e-09 68.2 41 73.2
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.2e-07 61.6 63 52.4
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 3.0e-06 57.0 36 66.7


User provided reference genes

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