Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 2.1e-197 692.2 361 100.0
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.0e-167 593.6 361 80.9
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 2.1e-160 569.3 361 78.7
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.8e-151 537.3 361 74.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 9.7e-150 533.9 361 73.4
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.2e-147 526.9 361 72.9
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 4.5e-147 525.0 368 71.5
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 4.5e-147 525.0 361 72.9
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 7.7e-147 524.2 361 72.9
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 2.9e-146 522.3 379 69.7
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.1e-145 520.4 373 71.0
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.5e-145 520.0 369 71.0
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.9e-145 519.6 361 72.3
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 9.4e-145 517.3 361 71.5
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.1e-144 516.2 376 68.9
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 2.7e-144 515.8 374 70.9
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.6e-144 515.4 361 71.7
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.4e-143 513.5 369 70.2
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.8e-143 513.1 361 71.5
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 3.0e-143 512.3 369 69.9
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 5.2e-143 511.5 365 70.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 5.2e-143 511.5 362 71.5
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 8.8e-143 510.8 361 70.1
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.6e-142 509.2 361 70.1
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.3e-142 508.8 379 68.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 4.4e-142 508.4 364 69.8
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 5.7e-142 508.1 361 70.9
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.7e-141 506.5 361 71.5
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.2e-141 506.1 372 69.9
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 6.3e-141 504.6 361 70.4
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 6.3e-141 504.6 365 69.3
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 8.2e-141 504.2 362 70.7
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 8.2e-141 504.2 361 69.8
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.8e-140 503.1 362 70.2
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 1.8e-140 503.1 361 69.8
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.8e-140 503.1 376 68.1
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.4e-140 502.7 365 68.8
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 3.1e-140 502.3 376 68.4
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 3.1e-140 502.3 362 70.2
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.1e-140 501.9 365 68.8
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 4.1e-140 501.9 361 68.4
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 5.3e-140 501.5 362 70.7
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 2.0e-139 499.6 364 67.9
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.7e-139 499.2 362 70.2
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 4.5e-139 498.4 365 68.2
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 4.5e-139 498.4 365 68.2
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 5.9e-139 498.0 362 70.2
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 7.7e-139 497.7 365 68.5
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 7.7e-139 497.7 366 67.8
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.3e-138 496.9 376 67.6
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 3.8e-138 495.4 364 68.4
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 3.8e-138 495.4 364 68.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 5.0e-138 495.0 367 68.1
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.5e-137 493.4 374 67.4
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.5e-137 493.4 376 67.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.9e-137 493.0 376 67.3
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 2.5e-137 492.7 367 67.8
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 2.5e-137 492.7 362 69.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.5e-137 492.7 362 69.3
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.2e-137 492.3 363 67.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 4.2e-137 491.9 368 67.4
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.2e-136 490.3 361 68.7
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.2e-136 490.3 362 69.3
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.1e-136 489.6 363 67.2
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.7e-136 489.2 363 67.8
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 4.7e-136 488.4 372 65.9
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 4.7e-136 488.4 364 67.6
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 6.1e-136 488.0 373 65.7
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 8.0e-136 487.6 362 68.0
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.8e-135 486.5 373 65.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.8e-135 486.5 362 67.1
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 2.3e-135 486.1 375 65.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 4.0e-135 485.3 363 66.9
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.2e-134 483.8 362 68.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.2e-134 483.8 370 67.3
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 376 66.5
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.5e-134 483.4 362 66.6
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 375 65.3
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.6e-134 482.6 370 64.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.5e-134 481.1 363 67.5
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 9.8e-134 480.7 362 66.9
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.8e-133 479.2 362 67.4
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.8e-133 479.2 370 66.5
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 2.8e-133 479.2 371 67.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.8e-133 479.2 376 64.9
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.3e-133 477.6 376 65.7
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.1e-132 477.2 362 65.7
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.4e-132 476.1 362 66.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 3.1e-132 475.7 362 66.3
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 4.1e-132 475.3 382 63.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.1e-132 475.3 362 67.1
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 9.1e-132 474.2 358 67.3
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 5.9e-131 471.5 362 66.9
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.0e-130 470.7 362 64.9
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 8.5e-130 467.6 362 65.5
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.9e-129 466.5 361 65.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 2.5e-129 466.1 394 62.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.1e-128 461.5 353 66.3
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-127 460.7 382 62.0
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.4e-127 460.3 382 62.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 8.8e-127 457.6 362 65.5
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-126 456.8 365 62.7
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 7.5e-126 454.5 364 62.4
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.7e-122 443.4 292 76.0
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 8.6e-122 441.0 308 73.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.3e-121 438.7 379 60.2
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-120 437.2 315 70.2
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 3.0e-119 432.6 361 60.1
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.0e-118 429.9 362 59.7
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 9.8e-118 427.6 364 62.1
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.7e-117 425.6 357 61.1
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.2e-115 420.6 350 65.1
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.4e-108 396.4 386 52.3
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.7e-107 392.9 340 58.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.0e-106 389.4 284 71.1
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.6e-106 388.3 316 64.6
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.1e-105 387.5 364 56.6
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.5e-105 387.1 354 58.5
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.8e-103 378.3 315 62.9
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.1e-100 370.9 373 54.7
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 5.1e-98 362.1 304 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 5.8e-94 348.6 360 50.3
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.3e-93 347.4 272 63.6
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.5e-81 307.4 189 81.5
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.4e-68 263.5 161 80.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.6e-67 260.8 150 84.7
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 8.7e-66 255.0 251 52.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 2.1e-64 250.4 377 39.0
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 2.6e-62 243.4 254 52.4
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 6.7e-58 228.8 328 46.3
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 3.1e-55 219.9 210 54.3
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.7e-53 214.2 159 69.8
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 2.3e-50 203.8 181 54.7
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 5.7e-49 199.1 328 34.8
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.4e-47 194.5 167 61.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-45 188.0 167 60.5
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.8e-37 159.8 228 39.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.7e-35 152.9 133 63.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.0e-34 151.8 133 62.4
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.1e-31 139.8 121 61.2
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.7e-29 134.4 81 81.5
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 7.2e-28 129.0 157 42.0
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.3e-25 120.2 84 71.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 9.4e-20 102.1 77 59.7
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 9.8e-17 92.0 79 62.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.7e-16 91.3 115 46.1
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.2e-16 90.9 51 84.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 5.0e-13 79.7 200 33.5
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.2e-11 75.1 75 53.3


User provided reference genes

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