Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.1e-160 569.3 362 100.0
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.1e-160 569.3 362 100.0
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.6e-121 438.3 363 82.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.7e-120 435.3 364 76.9
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 5.2e-119 431.8 363 76.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.7e-117 425.6 365 80.3
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.5e-115 419.1 363 77.1
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-114 415.6 366 74.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.9e-113 413.3 365 76.7
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 4.3e-113 412.1 364 78.0
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.7e-112 408.7 363 71.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.9e-109 399.4 361 76.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.1e-107 393.3 377 70.8
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.3e-106 390.6 375 69.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 6.6e-106 388.3 361 69.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-106 387.9 363 70.8
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.9e-105 386.7 368 75.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.6e-105 385.2 364 76.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 6.2e-104 381.7 364 71.7
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-103 380.6 364 70.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.4e-102 375.6 362 72.9
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.3e-98 364.0 370 68.1
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 2.3e-98 363.2 363 71.6
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.3e-97 359.4 363 66.9
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 7.3e-97 358.2 365 72.9
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 7.3e-97 358.2 364 73.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 2.8e-96 356.3 375 66.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.1e-96 354.8 411 67.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.1e-96 354.8 411 67.4
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.1e-95 352.8 365 67.9
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.0e-95 352.4 362 68.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 4.0e-95 352.4 362 68.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 5.2e-95 352.1 364 66.5
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 9.0e-95 351.3 369 70.5
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.4e-94 349.0 362 67.7
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.2e-93 346.7 350 70.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 8.4e-93 344.7 366 67.5
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 8.4e-93 344.7 363 68.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.4e-92 342.0 364 66.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.6e-91 340.5 364 71.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.6e-91 340.5 391 66.0
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.7e-91 339.7 365 70.7
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 6.0e-91 338.6 369 68.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.5e-89 334.0 364 70.1
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.6e-88 330.5 289 79.2
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.1e-88 330.1 391 63.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.1e-88 330.1 365 67.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 6.2e-88 328.6 367 65.4
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-87 327.8 370 68.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-87 327.4 367 65.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 5.3e-87 325.5 367 69.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.6e-86 323.2 365 67.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.6e-86 323.2 365 66.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 7.6e-86 321.6 399 64.2
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.9e-85 319.7 370 61.1
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.8e-85 319.3 377 66.6
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.9e-84 317.0 363 65.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.2e-84 315.8 363 65.6
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.7e-83 313.2 361 66.5
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.6e-83 312.4 364 68.4
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.9e-83 311.6 374 66.6
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.0e-82 311.2 363 65.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.3e-82 310.1 350 69.1
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.5e-81 307.4 374 66.0
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.9e-81 307.0 372 66.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 7.4e-81 305.1 371 67.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-80 303.5 365 60.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.8e-80 303.1 374 65.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.4e-79 300.8 364 66.2
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.6e-78 296.6 370 62.2
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.6e-78 296.6 366 65.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-77 294.3 350 65.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-77 293.9 376 61.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.1e-76 291.2 363 62.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.9e-76 290.4 360 58.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.4e-76 290.0 371 65.8
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 1.2e-75 287.7 335 70.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.2e-75 287.7 365 63.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.7e-75 286.6 363 66.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.9e-74 282.7 350 59.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 8.7e-74 281.6 364 58.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.1e-73 281.2 372 65.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.1e-73 281.2 374 59.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.5e-73 280.0 367 54.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.8e-72 275.8 380 62.1
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.1e-71 274.6 374 58.0
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.2e-70 271.2 357 55.2
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.0e-70 270.4 380 62.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.6e-70 270.0 370 62.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.6e-70 270.0 366 56.8
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-68 264.2 367 59.9
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.9e-68 263.8 334 65.3
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 4.2e-68 262.7 386 54.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.1e-68 261.9 367 55.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 7.1e-68 261.9 366 59.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.3e-68 261.5 365 60.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 9.0e-63 245.0 371 61.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.4e-62 243.0 363 47.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.9e-62 242.3 180 82.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 7.6e-62 241.9 369 60.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-61 241.5 371 60.1
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.0e-61 241.5 371 60.1
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.9e-61 240.0 366 54.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.5e-61 238.4 371 49.6
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 8.5e-61 238.4 264 59.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.1e-60 238.0 371 59.6
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.9e-60 237.3 369 59.9
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 2.5e-60 236.9 365 55.1
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 5.5e-60 235.7 371 58.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.1e-59 232.3 334 54.8
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.9e-59 231.9 370 48.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-58 231.1 364 56.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.3e-58 230.3 332 61.1
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 3.0e-58 229.9 370 59.2
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 3.4e-54 216.5 371 55.3
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 5.9e-54 215.7 370 56.8
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 7.7e-54 215.3 369 58.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.3e-53 214.5 659 35.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.9e-53 213.4 371 53.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.9e-52 210.7 369 53.9
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.2e-52 209.9 365 51.2
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.2e-52 209.9 365 51.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.5e-52 209.1 365 45.2
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.0e-49 200.7 379 49.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.8e-48 196.1 176 80.7
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.8e-48 196.1 373 50.4
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.9e-46 189.1 365 49.9
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 5.9e-46 189.1 375 47.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.2e-44 182.2 364 50.0
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.1e-43 179.1 381 50.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 6.3e-40 169.1 368 40.2
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.4e-39 167.2 372 52.2
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-39 167.2 370 43.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-39 167.2 370 43.2
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.1e-39 166.8 368 39.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.6e-38 163.7 202 59.4
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-37 161.8 374 43.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-36 157.5 374 42.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 2.5e-36 157.1 364 48.6
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 2.5e-36 157.1 364 48.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.2e-36 156.8 374 42.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 6.1e-35 152.5 214 51.4
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.7e-34 149.1 280 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.2e-32 144.1 203 58.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.7e-30 137.1 209 52.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-29 134.0 102 81.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.9e-28 131.0 342 49.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 5.5e-28 129.4 145 62.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.7e-27 127.1 175 52.0
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.9e-21 107.1 145 54.5
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.6e-21 105.5 65 90.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.4e-18 98.2 242 39.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.3e-18 97.4 209 39.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-18 96.7 215 44.7
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.7e-16 91.3 170 47.6
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 3.7e-16 90.1 109 57.8
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.9e-16 89.7 112 53.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 7.0e-15 85.9 72 65.3
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 7.0e-15 85.9 72 65.3
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-14 85.1 112 56.2
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 8.9e-10 68.9 104 47.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-09 68.6 94 51.1
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-09 68.2 98 50.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.5e-09 65.9 97 47.4
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.9e-08 63.2 65 55.4
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 8.3e-08 62.4 54 63.0
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.4e-07 61.6 36 80.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 9.2e-07 58.9 186 36.0
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 3.5e-06 57.0 184 35.9


User provided reference genes

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