Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 2.2e-52 208.8 111 100.0
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 7.6e-37 157.1 81 100.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.1e-35 153.3 81 97.5
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.2e-35 151.8 81 95.1
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.2e-35 151.8 81 95.1
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 3.2e-35 151.8 81 96.3
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 4.2e-35 151.4 84 94.0
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 7.1e-35 150.6 81 95.1
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 7.1e-35 150.6 81 95.1
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 7.1e-35 150.6 81 95.1
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 9.3e-35 150.2 81 93.8
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 9.3e-35 150.2 81 93.8
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.2e-34 149.8 81 93.8
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.6e-34 149.4 81 93.8
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.6e-34 149.4 81 93.8
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.6e-34 149.4 81 93.8
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 2.7e-34 148.7 85 90.6
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.7e-34 148.7 81 93.8
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 3.5e-34 148.3 81 93.8
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 95.1
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 4.6e-34 147.9 81 92.6
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 6.0e-34 147.5 81 93.8
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 7.9e-34 147.1 84 90.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 7.9e-34 147.1 81 92.6
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.0e-33 146.7 81 91.4
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 1.0e-33 146.7 81 91.4
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.0e-33 146.7 81 91.4
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.3e-33 146.4 81 92.6
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.3e-33 146.4 81 93.8
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.3e-33 146.4 81 92.6
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.3e-33 146.4 81 92.6
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.8e-33 146.0 81 91.4
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.8e-33 146.0 81 90.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.0e-33 145.2 81 91.4
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.0e-33 145.2 81 91.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 3.0e-33 145.2 81 90.1
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 5.1e-33 144.4 81 90.1
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.7e-33 143.7 81 90.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 8.7e-33 143.7 81 91.4
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 1.9e-32 142.5 78 93.6
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.9e-32 142.5 81 91.4
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.5e-32 142.1 81 88.9
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.5e-32 142.1 78 93.6
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 4.3e-32 141.4 81 88.9
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 4.3e-32 141.4 81 88.9
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.3e-32 141.4 81 88.9
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 4.3e-32 141.4 80 91.2
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 88.9
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 90.1
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 90.1
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 90.1
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 90.1
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 4.3e-32 141.4 81 90.1
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 5.6e-32 141.0 81 88.9
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.6e-32 141.0 81 90.1
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 5.6e-32 141.0 78 93.6
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 7.4e-32 140.6 81 91.4
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.3e-31 139.8 81 88.9
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-31 139.4 78 91.0
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-31 139.4 78 91.0
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-31 139.4 78 91.0
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.1e-31 139.0 81 87.7
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 6.2e-31 137.5 75 92.0
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-31 137.5 81 86.4
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-30 136.7 81 85.2
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.8e-30 136.0 78 89.7
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 2.4e-30 135.6 76 88.2
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.0e-30 134.8 81 86.4
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 4.0e-30 134.8 78 88.5
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 6.9e-30 134.0 81 85.2
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 9.0e-30 133.7 74 91.9
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 9.0e-30 133.7 85 80.0
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 1.2e-29 133.3 78 88.5
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 2.0e-29 132.5 74 93.2
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.0e-29 132.5 78 85.9
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.6e-29 132.1 81 84.0
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-29 131.7 81 85.2
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.1e-27 126.7 83 84.3
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 2.4e-27 125.6 69 94.2
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 5.5e-27 124.4 70 90.0
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.3e-27 123.6 81 81.5
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.3e-27 123.6 78 84.6
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 1.6e-26 122.9 81 77.8
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 3.5e-26 121.7 75 85.3
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.9e-24 115.9 74 83.8
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 7.4e-24 114.0 59 98.3
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 1.3e-23 113.2 81 79.0
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.7e-23 111.7 61 91.8
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 2.4e-22 109.0 83 72.3
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 6.9e-22 107.5 63 87.3
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-21 105.1 61 86.9
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-21 105.1 63 85.7
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.4e-21 105.1 64 82.8
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-20 102.8 63 84.1
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 3.8e-20 101.7 58 91.4
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 4.9e-20 101.3 59 84.7
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-19 99.8 59 84.7
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 6.0e-18 94.4 60 76.7
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 1.5e-16 89.7 74 67.6
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.8e-14 82.8 47 87.2
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 2.4e-14 82.4 46 89.1
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 4.1e-14 81.6 57 71.9
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.0e-14 80.5 47 87.2
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-13 79.3 47 83.0
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 4.5e-13 78.2 43 88.4
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.5e-13 78.2 43 88.4
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.5e-13 78.2 43 88.4
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 4.5e-13 78.2 43 88.4
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 4.5e-13 78.2 43 88.4
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 4.5e-13 78.2 43 88.4
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 4.5e-13 78.2 43 88.4
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 4.5e-13 78.2 43 88.4
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 4.5e-13 78.2 43 88.4
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 4.5e-13 78.2 43 88.4
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.5e-13 78.2 43 88.4
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 1.0e-12 77.0 83 53.0
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.3e-12 76.6 43 86.0
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 1.7e-12 76.3 50 76.0
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 2.2e-12 75.9 43 86.0
arahy.Tifrunner.gnm1.ann1.7FJY1D Arachis hypogaea HOM05D000216 ORTHO05D000634 2.9e-12 75.5 54 68.5
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 2.9e-12 75.5 46 78.3
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.8e-12 75.1 46 76.1
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.8e-12 75.1 43 83.7
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.8e-12 75.1 43 86.0
Dinv08908 Davidia involucrata HOM05D000216 ORTHO05D000634 1.4e-11 73.2 40 92.5
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 7.2e-11 70.9 43 79.1
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.4e-08 60.8 35 85.7
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.7e-08 60.5 32 90.6
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.7e-08 60.5 32 90.6
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.7e-08 60.5 32 90.6
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.7e-07 58.5 32 87.5
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-06 57.0 29 93.1
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.8e-06 56.2 31 83.9
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-06 55.8 28 96.4
Atru.chr4.564 Acer truncatum HOM05D000216 ORTHO05D004083 6.9e-06 54.3 71 52.1
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.9e-06 54.3 32 78.1
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 9.1e-06 53.9 68 54.4


User provided reference genes

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