Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.3e-118 428.3 254 100.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 4.6e-80 302.0 204 82.8
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.4e-75 285.8 201 76.6
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.4e-75 285.8 247 75.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.9e-73 280.0 185 81.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.5e-72 275.8 243 72.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 7.9e-72 274.6 254 72.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.3e-71 273.9 255 66.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.8e-71 273.5 250 70.0
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.8e-71 273.5 186 80.6
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-71 272.3 179 84.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-71 272.3 179 84.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.9e-71 272.3 186 81.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.5e-70 269.6 171 83.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.3e-70 268.9 178 82.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.4e-70 268.1 186 80.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 9.6e-70 267.7 172 82.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.6e-69 266.9 178 82.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.6e-69 266.9 248 70.2
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 3.7e-69 265.8 248 70.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 4.8e-69 265.4 243 65.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 6.2e-69 265.0 166 84.3
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.2e-69 264.6 255 65.5
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-68 264.2 197 77.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.1e-68 262.7 262 65.6
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.0e-68 262.3 201 74.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 4.0e-68 262.3 243 72.4
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.3e-68 261.9 185 78.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.2e-67 260.8 249 69.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 201 74.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.2e-67 260.8 217 70.0
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-67 260.4 170 81.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.6e-67 259.6 190 76.8
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.6e-67 259.6 258 64.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 4.5e-67 258.8 179 77.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.8e-67 258.5 167 80.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.6e-67 258.1 238 76.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 7.6e-67 258.1 249 67.1
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 7.6e-67 258.1 159 83.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.3e-66 257.3 263 66.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.7e-66 256.9 163 83.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.7e-66 256.9 154 86.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.2e-66 256.5 175 79.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.9e-66 256.1 210 69.5
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.9e-66 256.1 167 79.6
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.8e-66 255.8 194 72.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.9e-66 255.4 253 63.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 4.9e-66 255.4 159 80.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 6.5e-66 255.0 182 79.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 8.4e-66 254.6 258 68.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 8.4e-66 254.6 164 82.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.4e-66 254.6 253 63.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 8.4e-66 254.6 239 65.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-65 254.2 205 74.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-65 253.8 176 77.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-65 253.8 258 68.2
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-65 253.8 258 68.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-65 253.4 184 75.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-65 253.4 181 76.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.9e-65 253.4 159 79.9
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-65 252.7 157 83.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-65 252.7 180 77.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.2e-65 252.7 157 83.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.2e-65 252.7 164 82.9
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 3.2e-65 252.7 190 75.3
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.2e-65 252.3 151 87.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 4.2e-65 252.3 253 62.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 5.5e-65 251.9 296 57.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 7.1e-65 251.5 177 75.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 7.1e-65 251.5 180 77.2
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.1e-65 251.5 177 77.4
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.3e-65 251.1 258 65.5
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 9.3e-65 251.1 253 69.6
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.2e-64 250.8 154 84.4
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.2e-64 250.8 165 78.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.2e-64 250.8 171 81.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.6e-64 250.4 154 84.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.6e-64 250.4 178 75.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.6e-64 250.4 180 75.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.6e-64 250.4 263 60.1
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-64 250.0 258 62.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-64 249.6 168 79.2
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.7e-64 249.6 168 79.2
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.5e-64 249.2 207 68.6
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.5e-64 249.2 153 86.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.5e-64 249.2 155 83.2
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.6e-64 248.8 173 76.3
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.0e-64 248.4 196 73.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-63 247.3 179 76.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.8e-63 246.9 179 75.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.8e-63 246.9 179 74.9
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.8e-63 246.9 153 85.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 3.0e-63 246.1 202 71.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.9e-63 245.7 164 76.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 3.9e-63 245.7 164 76.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.9e-63 245.7 164 76.8
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.1e-63 245.4 158 81.6
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 6.7e-63 245.0 158 81.0
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.7e-63 245.0 251 67.3
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.7e-63 245.0 251 66.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 8.7e-63 244.6 165 77.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.9e-62 243.4 240 64.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.9e-62 243.4 145 86.2
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.5e-62 243.0 209 68.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 3.3e-62 242.7 242 65.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.3e-62 242.7 146 84.2
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 3.3e-62 242.7 252 64.3
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.7e-62 241.9 174 75.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.4e-62 241.5 271 68.6
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.3e-61 240.7 185 73.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.2e-61 240.0 149 84.6
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.7e-61 239.2 176 74.4
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.8e-60 236.9 152 82.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.1e-60 235.7 255 63.9
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.1e-60 235.7 255 63.9
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.5e-59 232.3 152 78.9
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.5e-59 232.3 152 78.9
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.9e-58 229.6 170 71.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-58 229.6 262 59.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.9e-57 226.9 178 69.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-57 226.9 254 61.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.9e-57 226.9 155 78.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.5e-57 226.5 238 64.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.5e-57 226.5 238 64.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 7.2e-57 224.9 149 79.9
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 7.2e-57 224.9 140 81.4
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.6e-56 223.8 153 79.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 7.9e-56 221.5 191 67.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.0e-55 221.1 165 74.5
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.3e-55 219.9 251 62.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.0e-55 219.5 204 63.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 8.8e-55 218.0 152 78.3
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.3e-54 215.7 185 67.6
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 7.4e-54 214.9 130 85.4
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 7.4e-54 214.9 134 81.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 5.3e-52 208.8 252 57.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.3e-47 193.4 258 53.1
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.8e-45 186.4 153 68.6
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-45 185.7 188 59.6
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-44 184.1 127 77.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.1e-44 183.0 157 62.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 9.1e-44 181.4 227 54.2
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.1e-44 181.4 171 64.3
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.2e-43 181.0 109 85.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 4.5e-43 179.1 134 72.4
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-42 177.2 123 76.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.5e-41 173.3 157 63.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 7.2e-41 171.8 185 57.3
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.9e-39 166.0 168 58.3
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-36 157.9 175 53.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.5e-35 152.5 172 54.1
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.7e-35 151.8 94 83.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-33 147.9 247 49.8
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-33 147.9 247 49.8
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.1e-32 143.7 94 78.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-30 137.5 109 69.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 7.7e-27 125.2 136 51.5
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.2e-21 107.1 138 48.6
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-18 97.8 49 93.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 9.8e-14 81.6 40 100.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 8.3e-13 78.6 99 51.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-11 74.7 71 62.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.3e-10 70.5 52 65.4
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 4.4e-06 56.2 33 84.8


User provided reference genes

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