Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.5e-175 617.5 299 100.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.1e-133 480.3 293 81.2
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.1e-133 478.8 293 81.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.8e-115 418.7 243 82.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 5.8e-100 368.2 243 71.2
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.9e-99 365.9 240 71.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.9e-98 363.2 243 68.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 9.3e-98 360.9 243 70.4
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.7e-97 359.4 243 68.3
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.8e-96 356.7 243 68.3
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.3e-96 356.3 245 67.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.3e-96 356.3 243 68.3
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 3.0e-96 355.9 243 69.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.7e-96 354.4 239 68.6
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-95 354.0 247 67.2
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.3e-94 350.5 243 68.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.2e-94 349.7 244 67.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.8e-94 349.4 291 59.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.3e-94 348.2 234 69.2
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.2e-92 344.0 249 67.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.5e-92 343.6 250 66.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.5e-92 343.6 234 67.9
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.4e-92 342.4 235 67.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.9e-92 341.7 246 65.9
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.7e-91 340.1 248 65.7
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 5.0e-91 338.6 234 66.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 6.5e-91 338.2 243 64.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.1e-90 337.4 243 65.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.5e-90 336.3 246 63.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 2.5e-90 336.3 240 62.1
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.2e-90 334.7 244 64.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-89 332.8 244 66.0
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 3.6e-89 332.4 234 66.2
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.8e-88 330.1 244 63.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-88 329.7 244 63.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 4.3e-87 325.5 242 64.0
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.3e-87 325.5 247 63.2
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 5.7e-87 325.1 243 63.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 9.7e-87 324.3 234 62.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-86 322.8 248 62.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.8e-86 322.8 241 62.7
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.8e-86 322.8 245 62.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.8e-86 322.0 248 61.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 6.3e-86 321.6 244 61.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.1e-85 320.9 235 64.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.8e-85 320.1 248 61.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.4e-85 319.7 241 61.8
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.1e-85 317.8 248 61.7
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.2e-84 317.4 240 65.8
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.5e-84 317.0 235 64.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.0e-84 316.6 228 66.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.6e-84 316.2 247 61.5
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.6e-84 316.2 244 63.5
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.9e-84 315.1 237 65.8
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 7.7e-84 314.7 241 63.1
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.7e-84 314.7 248 61.3
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.7e-83 313.5 242 63.6
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.7e-83 313.5 242 63.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.9e-83 312.8 235 61.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.0e-83 312.0 248 61.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.0e-83 312.0 248 61.7
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 5.0e-83 312.0 241 65.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 8.5e-83 311.2 238 59.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.4e-82 310.5 249 58.6
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.5e-82 309.7 248 61.7
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 5.5e-82 308.5 246 60.2
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 9.4e-82 307.8 241 62.7
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.2e-81 307.4 249 61.4
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.6e-81 307.0 255 61.2
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.6e-81 307.0 243 60.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-81 306.2 243 60.9
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 6.1e-81 305.1 243 59.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 7.9e-81 304.7 258 59.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.9e-81 304.7 243 62.6
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-80 304.3 243 59.7
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-80 302.8 243 58.0
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.9e-80 302.4 260 57.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.1e-79 300.8 241 58.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.0e-79 300.1 228 61.4
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.6e-79 299.7 241 62.2
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.4e-79 298.9 239 59.8
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-79 298.9 246 56.9
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.4e-79 298.1 240 61.2
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-78 297.4 243 59.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-78 296.2 239 58.2
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.8e-78 296.2 233 60.9
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.7e-78 295.8 233 61.4
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.8e-77 293.5 239 57.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.4e-77 293.1 243 57.6
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.4e-77 293.1 242 60.7
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.1e-77 292.7 243 57.6
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 4.1e-77 292.4 240 56.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.1e-77 292.4 233 59.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.1e-77 292.4 233 59.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 9.1e-77 291.2 233 60.9
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.2e-76 290.8 237 59.5
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.2e-76 290.8 237 59.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.0e-76 290.0 239 57.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-76 290.0 246 56.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.5e-76 288.9 240 61.7
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 4.5e-76 288.9 239 57.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 4.5e-76 288.9 235 59.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 5.9e-76 288.5 245 56.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 5.9e-76 288.5 245 56.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 7.7e-76 288.1 241 56.8
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.0e-75 287.7 236 58.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.7e-75 287.0 244 59.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-75 286.2 216 63.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.9e-75 286.2 243 58.4
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.8e-75 285.8 233 57.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.5e-75 284.6 238 56.7
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 8.5e-75 284.6 230 57.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.9e-74 283.5 233 58.8
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.2e-74 282.7 233 58.4
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.2e-74 282.3 236 56.4
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 4.2e-74 282.3 239 56.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 4.2e-74 282.3 239 56.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.2e-74 282.3 235 58.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.2e-73 280.8 239 56.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.6e-73 280.4 239 58.6
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 8.0e-73 278.1 242 57.9
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.0e-72 277.7 205 63.9
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-72 277.3 233 57.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.9e-72 275.8 242 57.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-71 274.2 206 61.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.3e-71 272.7 233 55.8
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 7.4e-71 271.6 225 59.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.3e-70 270.8 233 56.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.7e-70 270.4 216 59.3
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.7e-70 269.2 240 57.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-70 268.9 206 60.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 6.3e-70 268.5 246 56.1
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.4e-69 266.5 232 54.7
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 4.1e-69 265.8 234 55.6
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-68 263.8 246 53.3
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.6e-68 263.8 220 59.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.7e-68 261.5 238 57.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-67 260.8 188 62.8
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 3.8e-67 259.2 211 57.3
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.1e-66 257.7 234 53.4
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 7.2e-66 255.0 238 55.0
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.7e-65 252.3 240 50.8
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 6.1e-65 251.9 293 46.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.3e-64 250.0 234 52.6
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.0e-63 246.9 248 49.6
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.3e-63 246.1 237 54.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.2e-60 237.7 157 71.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.6e-60 237.3 239 48.5
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 5.0e-59 232.3 243 50.6
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 8.5e-59 231.5 239 49.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.9e-58 230.3 256 48.4
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.5e-58 229.9 208 55.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 8.0e-57 224.9 223 52.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.0e-56 224.6 185 62.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 6.8e-56 221.9 163 60.7
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-51 206.5 163 60.1
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-49 198.7 246 43.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.8e-48 195.3 155 60.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-47 194.1 208 51.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 6.3e-46 188.7 260 37.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.0e-44 183.7 269 38.3
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-41 173.7 202 48.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 9.8e-39 164.9 130 58.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-37 160.6 191 43.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.0e-35 152.5 120 64.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 8.6e-35 151.8 116 62.9
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.9e-34 150.6 98 70.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.3e-34 149.8 157 52.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-30 137.9 107 57.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 5.4e-29 132.5 155 45.8
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.3e-26 122.9 93 62.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 6.2e-25 119.0 117 52.1
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.3e-22 111.3 90 58.9
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.9e-22 110.2 74 67.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.9e-22 109.4 89 57.3
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 4.9e-22 109.4 190 34.7
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 8.3e-22 108.6 166 36.7
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.6e-20 102.8 98 50.0
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 4.3e-18 96.3 143 42.7
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.1e-17 92.0 80 53.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.1e-16 90.1 96 40.6
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.0e-11 75.1 315 24.4
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-10 71.6 50 58.0
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 4.9e-06 56.2 87 37.9


User provided reference genes

Program Settings