Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 3793.8 1914 100.0
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 3063.1 1961 78.8
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2984.1 1914 78.8
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2616.3 1921 68.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2554.2 1921 67.8
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2546.9 1917 67.6
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2531.9 1922 67.0
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2523.4 1921 66.8
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2511.1 1922 66.5
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2511.1 1918 66.4
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2509.2 1919 66.3
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2504.6 1919 66.1
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2490.7 1956 65.1
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2468.0 1917 65.4
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2465.3 1935 65.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2441.0 1920 64.2
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2439.1 1922 65.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2432.9 1903 65.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2425.2 1925 63.9
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2421.7 1921 64.3
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2417.1 1920 63.8
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2415.6 1926 64.9
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2409.4 1931 63.4
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2383.6 1920 63.6
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2369.7 1945 62.8
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2351.2 1921 62.4
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2350.9 2091 60.0
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2343.2 1922 62.5
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2326.6 1915 62.2
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2317.7 1920 62.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2315.8 1940 61.6
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2310.8 2414 52.8
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2303.1 1918 61.3
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2296.2 1921 61.9
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2295.8 1922 61.7
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2271.9 1940 60.9
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2268.0 1918 60.6
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2266.5 1921 61.1
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2266.1 1919 61.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2257.6 1968 59.5
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2257.3 1922 60.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2245.7 1918 60.9
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2245.3 1919 60.6
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2241.8 1916 60.4
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2234.1 1918 60.1
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2226.8 1945 60.1
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2180.6 2043 56.8
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 2165.2 1936 58.1
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2149.8 1922 58.1
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 2118.2 1917 57.8
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 2078.9 1933 56.6
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2077.4 1922 56.3
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2072.7 1921 55.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 2067.4 1797 59.5
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 2066.6 1924 56.7
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 2063.1 1927 57.5
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 2053.5 1925 56.6
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 2053.1 1865 57.1
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2052.7 1922 55.1
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 2028.1 1916 55.9
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 2027.7 1931 55.1
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 2018.8 1935 54.5
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2006.9 1920 55.3
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1994.9 1917 53.9
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1973.0 1966 52.7
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1972.6 1914 54.4
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1970.7 1923 55.2
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1967.2 1923 53.7
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1964.9 1923 53.7
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1949.9 1913 53.5
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1947.9 1912 53.6
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1938.3 1920 53.1
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1934.8 1914 53.7
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1927.5 1914 53.3
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1924.1 1874 54.5
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1919.8 1915 53.1
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1917.1 1934 53.0
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1912.5 1926 53.1
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1912.1 1927 52.5
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1907.9 1829 54.8
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1905.2 1930 52.4
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1903.6 1914 53.0
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1902.1 1911 52.5
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1901.3 1832 53.8
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1899.8 1910 52.7
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1892.5 1912 52.5
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1889.8 1917 52.9
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1889.4 1924 52.2
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1865.5 1930 53.0
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1838.9 1966 50.6
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1911 51.4
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1789.2 1866 51.2
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1751.5 1328 66.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1729.5 888 98.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1718.0 1953 47.3
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1625.9 1705 51.0
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1610.9 1209 67.5
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1569.7 1582 53.5
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1537.7 1957 43.4
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1503.4 1958 43.4
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1422.9 1953 41.8
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1190.6 1105 55.6
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1172.5 2073 35.5
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1150.6 1148 52.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1100.9 1699 39.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1075.8 2045 34.3
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.7e-299 1033.1 1995 34.0
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.5e-278 964.1 1922 32.7
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 4.7e-267 926.0 1107 44.6
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 6.3e-248 862.4 781 57.4
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.5e-220 770.8 899 45.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 8.5e-152 543.1 707 45.0
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 3.0e-96 358.6 259 66.4
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 5.1e-88 331.3 165 97.0
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 2.4e-74 285.8 175 84.6
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 7.4e-71 274.2 172 78.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 7.4e-63 247.7 562 30.6
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 6.9e-53 214.5 228 54.8
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.5e-52 213.4 221 45.7
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-51 209.1 640 27.2
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 8.5e-51 207.6 412 32.8
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 4.2e-50 205.3 139 76.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 1.1e-47 197.2 206 46.6
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 5.1e-40 171.8 105 75.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.9e-32 145.6 209 40.7
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 2.8e-30 139.4 180 40.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.4e-29 136.3 95 71.6
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 3.5e-28 132.5 209 32.1
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 7.7e-28 131.3 127 59.1
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 6.1e-25 121.7 82 70.7
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 4.4e-23 115.5 105 63.8
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.0e-19 104.4 83 66.3
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 3.8e-19 102.4 125 40.0
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 5.9e-12 78.6 64 53.1
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 5.0e-11 75.5 64 51.6
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 5.5e-10 72.0 83 50.6


User provided reference genes

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