Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 3710.2 1882 100.0
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 3259.5 1886 87.9
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 3212.2 1935 85.1
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 3209.5 1885 86.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 3003.0 1893 81.0
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2944.1 1886 79.0
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2906.7 1888 77.5
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2857.8 1884 76.9
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2792.7 2007 71.9
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2780.7 1886 75.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2776.5 1887 75.0
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2254.9 1918 60.6
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2218.0 1965 58.8
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2191.8 1918 59.5
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2177.9 1919 59.3
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2172.9 1915 59.1
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2161.0 1923 59.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2159.8 1918 59.6
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2152.9 1918 59.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2144.4 1918 58.9
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2116.3 1917 58.1
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2106.3 1918 57.4
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2103.9 1917 57.5
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2100.5 1926 57.4
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2099.7 1917 57.5
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2095.5 1918 57.5
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2087.4 1954 56.6
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2083.5 1920 57.8
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2083.1 1925 57.8
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2082.0 1927 56.7
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2081.2 1935 56.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2072.0 1922 56.8
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2067.4 1923 57.7
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2057.7 1919 56.3
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2053.5 1948 57.0
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2022.7 1907 56.2
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2003.8 1918 55.9
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1991.1 1922 54.8
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1974.1 1921 54.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1954.1 1919 54.9
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1952.9 1921 54.3
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1948.7 2094 51.5
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1947.6 1914 54.1
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1944.9 1944 54.4
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1930.6 1918 53.6
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1922.9 1900 54.1
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1922.1 1942 54.0
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1916.7 1908 52.7
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1911.3 2417 45.9
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1902.9 1911 52.5
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1897.5 1946 53.2
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1871.7 1921 52.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1857.4 1938 51.9
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1854.0 1928 51.6
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1851.3 1915 52.5
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1846.6 1918 52.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1843.9 1910 51.7
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1835.1 1925 50.9
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1808.5 1902 51.6
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1808.1 1905 50.9
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1860 51.2
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1799.6 1905 50.8
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1797.3 1913 51.3
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1792.7 1955 49.3
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1789.6 1914 50.2
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1783.8 1793 52.9
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1780.8 1907 50.3
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1778.8 1921 50.4
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1778.1 1901 50.6
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1774.2 1935 49.5
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1773.8 1905 50.4
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1773.8 1904 50.9
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1773.1 1900 50.1
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1772.7 1905 50.3
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1764.6 1901 50.3
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1763.4 1917 50.5
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1760.0 1922 50.1
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1757.7 1902 50.5
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1749.9 1922 51.0
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1747.6 1905 49.3
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1745.7 1913 50.0
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1740.7 1861 50.6
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1739.5 1913 50.1
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1737.6 1818 51.9
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1726.8 1916 49.1
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1722.6 1920 49.1
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1680.6 1912 48.2
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1677.5 1828 48.8
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1641.7 1923 48.0
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1633.6 1908 48.1
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1610.5 1969 46.1
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1589.7 1864 47.2
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1576.6 1951 44.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1476.8 1691 47.3
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1423.7 1328 55.9
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1422.1 1964 42.0
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1398.6 1961 41.8
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1396.3 1567 48.9
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1313.1 1209 56.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1288.1 1955 39.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1105.5 887 64.9
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1082.4 2066 34.2
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1080.9 1102 51.5
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.6e-311 1073.2 2048 34.8
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.2e-293 1013.4 1137 50.0
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.9e-285 986.5 1992 33.9
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 4.4e-278 962.6 1901 33.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 7.1e-268 928.7 1690 35.0
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.3e-250 871.3 1095 43.3
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 3.5e-227 793.5 779 55.1
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 3.0e-202 710.7 909 43.0
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 8.4e-144 516.5 702 43.3
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 6.7e-85 320.9 172 95.9
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.6e-81 308.9 259 58.7
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 5.7e-68 264.6 178 78.7
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.5e-60 240.0 557 29.6
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-56 226.1 634 27.8
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.3e-55 222.2 221 46.6
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 4.7e-54 218.4 183 63.4
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 5.4e-50 204.9 280 49.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 4.6e-49 201.8 206 46.6
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.6e-47 194.9 387 31.3
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 7.3e-47 194.5 104 91.3
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.3e-45 189.5 142 71.8
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 1.0e-40 174.1 166 48.8
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.7e-40 173.3 97 90.7
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 3.6e-30 139.0 98 77.6
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.1e-29 137.5 83 83.1
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.3e-27 130.6 215 31.2
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 9.6e-23 114.4 130 52.3
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 2.1e-22 113.2 101 64.4
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 2.0e-20 106.7 216 31.9
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.2e-19 103.2 108 56.5
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 4.8e-14 85.5 126 33.3
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.0e-12 80.1 73 50.7
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.7e-11 77.0 73 49.3


User provided reference genes

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