Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.9e-206 722.2 360 100.0
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 9.9e-195 683.3 360 93.9
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 4.2e-193 677.9 360 93.6
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.0e-192 674.1 360 92.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 6.9e-180 634.0 361 87.0
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 2.6e-179 632.1 360 86.7
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 5.4e-177 624.4 360 84.7
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.3e-175 619.8 360 84.2
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 3.7e-173 611.7 360 84.4
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 5.3e-172 607.8 360 83.9
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 9.0e-172 607.1 362 82.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.5e-171 606.3 362 82.3
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.9e-169 599.4 362 82.3
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 2.0e-163 579.3 360 79.4
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 3.3e-158 562.0 360 78.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 7.7e-155 550.8 302 89.7
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.2e-136 490.3 360 66.7
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.1e-136 489.6 360 66.7
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.1e-136 489.6 360 67.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.9e-135 485.3 360 65.8
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 1.3e-133 480.3 360 65.6
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.7e-133 478.8 361 65.9
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 6.3e-133 478.0 360 66.9
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.1e-132 477.2 360 66.4
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.4e-132 476.9 375 64.3
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.8e-132 476.5 360 65.8
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.8e-132 476.5 360 65.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.8e-132 476.5 374 64.4
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.8e-132 476.5 374 64.4
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 2.4e-132 476.1 381 63.3
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.1e-132 475.7 360 64.7
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.1e-132 475.7 360 65.3
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 3.1e-132 475.7 371 64.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 5.3e-132 474.9 361 65.1
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 1.2e-131 473.8 360 66.1
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.6e-131 473.4 369 65.0
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.6e-131 473.4 381 63.0
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.0e-131 473.0 370 63.5
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 3.5e-131 472.2 360 63.9
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 4.5e-131 471.9 363 64.2
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 7.7e-131 471.1 362 65.5
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.0e-130 470.7 375 64.3
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.3e-130 470.3 363 64.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-130 469.9 369 64.5
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.2e-130 469.5 369 64.5
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 2.2e-130 469.5 369 64.5
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.2e-130 469.5 369 64.5
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.8e-130 468.8 372 64.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 8.5e-130 467.6 371 63.9
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.1e-129 467.2 360 64.2
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.1e-129 467.2 362 64.9
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.5e-129 466.8 360 63.6
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 2.5e-129 466.1 361 64.0
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 5.5e-129 464.9 375 62.1
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 9.4e-129 464.2 368 64.9
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.2e-128 463.8 369 63.4
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.2e-128 463.8 371 63.6
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.2e-128 463.8 373 64.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.6e-128 463.4 369 63.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.1e-128 463.0 367 63.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.1e-128 463.0 369 64.5
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.7e-128 462.6 380 61.1
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.6e-128 462.2 372 62.4
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.6e-128 462.2 361 64.0
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.1e-128 461.5 365 63.8
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 8.0e-128 461.1 365 63.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 8.0e-128 461.1 370 62.7
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.0e-127 460.7 367 63.5
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.4e-127 460.3 368 63.9
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 2.3e-127 459.5 372 62.6
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 4.0e-127 458.8 368 64.1
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 5.2e-127 458.4 362 63.3
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.2e-127 458.4 362 64.1
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 6.8e-127 458.0 368 63.3
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 6.8e-127 458.0 368 63.3
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 6.8e-127 458.0 374 61.8
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 8.8e-127 457.6 363 64.5
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 8.8e-127 457.6 378 62.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.2e-126 457.2 374 61.5
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.5e-126 456.8 368 62.0
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.0e-126 456.4 373 61.7
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.4e-126 455.7 366 63.4
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.5e-126 454.5 383 60.8
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 9.8e-126 454.1 365 63.8
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 9.8e-126 454.1 361 61.8
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.3e-125 453.8 372 61.6
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.3e-125 453.8 368 63.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.4e-124 450.3 362 63.5
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.8e-124 449.9 383 61.1
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.8e-124 449.9 366 62.6
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 2.4e-124 449.5 363 63.1
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 3.1e-124 449.1 362 63.0
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.0e-124 448.0 362 63.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-123 447.2 383 60.3
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 3.5e-123 445.7 362 63.3
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.0e-122 444.1 380 60.5
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.0e-122 444.1 365 62.5
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.7e-122 443.4 356 62.1
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.7e-122 443.4 383 59.8
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 3.8e-122 442.2 392 60.5
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.0e-120 434.5 360 62.2
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-119 433.0 366 60.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 6.8e-119 431.4 366 60.1
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.5e-118 427.9 355 62.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 7.7e-115 417.9 360 59.2
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 1.3e-114 417.2 361 59.8
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.5e-113 413.7 305 66.2
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.5e-110 403.7 363 57.6
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-110 402.9 314 63.7
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.9e-109 399.4 356 56.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 1.1e-108 397.5 381 55.4
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 6.1e-104 381.7 353 58.4
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-102 377.1 343 57.1
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 4.4e-102 375.6 292 67.8
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 8.3e-101 371.3 388 49.7
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 7.8e-99 364.8 364 54.4
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 7.8e-99 364.8 314 61.1
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.6e-96 355.9 314 58.6
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 9.8e-94 347.8 353 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 4.9e-93 345.5 358 52.5
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 8.9e-87 324.7 372 48.4
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.4e-86 322.4 294 56.1
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 9.9e-78 294.7 274 55.5
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.7e-75 286.6 197 74.6
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.5e-65 254.2 160 79.4
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.3e-64 251.1 167 77.8
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 5.3e-63 245.7 273 47.3
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 8.4e-61 238.4 373 39.1
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-56 224.6 259 49.8
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 2.8e-48 196.8 216 48.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-48 196.8 326 40.2
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 8.2e-48 195.3 181 51.4
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 6.9e-47 192.2 327 34.3
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.5e-46 189.5 159 61.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.1e-42 176.0 197 48.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.8e-40 170.2 197 47.7
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 9.7e-33 145.2 229 38.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-32 144.4 133 59.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 3.7e-32 143.3 133 58.6
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 9.1e-31 138.7 155 46.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.8e-29 133.3 121 58.7
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.1e-28 131.7 81 80.2
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.2e-21 107.5 83 63.9
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-18 97.8 114 47.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.8e-16 90.5 97 41.2
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 78.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 78.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-12 78.6 175 33.1
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 5.2e-10 69.7 91 46.2


User provided reference genes

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