Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 3781.1 1909 100.0
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 3224.9 1909 85.5
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 3003.8 1915 79.6
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2970.6 1915 78.5
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2959.5 1915 78.1
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2954.5 1952 77.3
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2814.3 2090 71.0
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2769.2 2413 62.3
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2610.1 1921 68.7
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2567.3 1969 67.0
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2565.8 1920 68.1
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2480.3 1925 66.4
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2437.5 1929 65.3
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2420.2 1920 64.4
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2398.2 1923 64.4
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2384.4 1928 63.8
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2379.7 1925 64.1
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2353.9 1923 62.8
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2333.9 1928 62.4
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2329.7 1941 61.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2325.8 1922 62.3
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2323.9 1933 61.9
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2313.5 1927 62.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2310.0 1909 62.8
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2303.9 1931 61.4
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2302.7 1926 62.6
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2288.8 1951 61.8
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2266.1 1923 61.4
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2259.2 1917 61.4
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2253.4 1921 60.8
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2232.2 1922 60.4
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2231.8 1947 59.9
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2211.4 1924 59.8
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2210.3 1921 60.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2204.5 1922 60.0
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2199.5 1924 59.4
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2194.1 1924 59.5
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2190.6 1947 59.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2186.0 1919 59.3
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2179.1 1919 58.8
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2174.1 1969 58.1
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2162.9 1925 58.6
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2162.5 1922 58.7
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2157.9 1923 58.6
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2122.4 1950 58.1
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2118.2 1920 58.4
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2094.3 2041 55.5
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2088.9 1924 56.8
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 2081.2 1945 56.7
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 2060.0 1923 56.1
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2052.7 1920 55.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2038.5 1920 55.7
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2026.1 1917 54.6
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 2005.7 1922 55.3
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1995.7 1803 58.3
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1991.1 1865 56.4
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1985.7 1928 55.2
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1975.3 1921 54.9
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1952.6 1929 53.7
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1952.2 1932 53.3
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1949.9 1936 55.2
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1943.3 1931 53.1
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1942.9 1966 52.7
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1925.2 1923 53.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1917.5 1919 53.2
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1902.9 1920 52.3
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1902.5 1877 54.8
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1893.2 1920 52.2
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1888.6 1920 52.7
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1888.6 1931 52.8
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1885.2 1918 52.6
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1881.3 1921 52.4
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1880.5 1928 52.9
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1879.0 1827 54.5
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1878.6 1917 52.4
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1874.8 1830 53.9
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1863.6 1934 52.2
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1860.5 1918 52.2
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1853.6 1915 52.5
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1852.8 1915 52.6
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1852.4 1916 51.8
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1845.1 1925 52.1
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1841.2 1923 51.8
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1838.2 1938 51.2
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1833.2 1918 51.6
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1828.5 1916 51.5
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1827.0 1936 51.4
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1804.6 1928 51.3
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1797.7 1919 51.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1785.4 1968 49.4
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1729.1 1867 50.3
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1726.1 1919 50.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1677.5 1958 47.0
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1645.2 1331 63.2
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1542.3 1712 49.4
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1525.4 1221 64.2
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1518.4 1582 52.0
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1497.3 1967 42.9
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1487.2 1959 41.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1394.4 1952 40.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1266.1 885 72.1
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1179.1 1107 55.2
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1145.2 2068 35.3
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1124.8 1146 52.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1079.3 2053 34.3
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1076.6 1694 38.7
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.4e-303 1047.3 1988 34.0
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 4.8e-280 969.1 1928 33.1
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-267 927.9 1113 46.1
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.1e-243 847.4 775 57.3
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.2e-206 725.3 901 42.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.0e-141 508.1 699 42.1
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 1.4e-90 339.7 259 64.5
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 5.1e-72 278.1 174 80.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 3.8e-67 261.9 564 31.4
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 8.4e-67 260.8 166 75.9
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.7e-54 218.8 218 47.7
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.4e-53 216.9 221 56.1
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-53 216.1 642 28.0
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 9.3e-50 204.1 627 26.5
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 1.8e-48 199.9 164 61.0
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.5e-47 196.1 206 45.6
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 4.8e-46 191.8 138 69.6
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.1e-42 180.6 210 50.0
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.6e-36 159.5 104 69.2
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 4.1e-29 135.6 205 32.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.5e-28 133.7 95 67.4
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 7.2e-26 124.8 122 55.7
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.5e-23 117.1 104 62.5
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.7e-22 113.6 83 63.9
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 5.3e-21 108.6 176 37.5
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 2.6e-20 106.3 83 65.1
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.6e-17 97.1 126 44.4
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.0e-12 80.1 107 37.4
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.9e-11 76.3 107 37.4
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 1.1e-10 74.3 83 49.4


User provided reference genes

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