Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G125600 Prunus persica HOM05D001458 ORTHO05D006787 2.9e-111 405.2 202 100.0
Atru.chr8.2536 Acer truncatum HOM05D001458 ORTHO05D006787 7.9e-24 114.8 187 42.8
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 1.5e-22 110.5 226 36.7
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 2.5e-22 109.8 219 37.4
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 4.3e-22 109.0 219 37.4
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 7.4e-22 108.2 219 37.4
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 7.4e-22 108.2 219 37.4
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 7.4e-22 108.2 219 37.0
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 7.4e-22 108.2 219 37.0
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 7.4e-22 108.2 219 37.0
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.0
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 9.6e-22 107.8 219 37.4
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 1.3e-21 107.5 219 37.0
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 1.3e-21 107.5 219 37.0
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 1.3e-21 107.5 219 37.0
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 1.6e-21 107.1 219 37.0
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 1.6e-21 107.1 219 37.0
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 37.0
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 36.5
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 2.1e-21 106.7 219 36.5
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 2.8e-21 106.3 219 37.0
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.8e-21 106.3 219 37.0
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 2.8e-21 106.3 219 36.5
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 2.8e-21 106.3 219 37.0
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 2.8e-21 106.3 219 37.0
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 3.7e-21 105.9 218 37.2
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 3.7e-21 105.9 219 36.5
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 3.7e-21 105.9 219 36.5
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 3.7e-21 105.9 219 36.5
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 3.7e-21 105.9 219 37.0
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 3.7e-21 105.9 219 36.5
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.1
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 37.0
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 4.8e-21 105.5 219 36.5
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 6.2e-21 105.1 219 36.1
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 6.2e-21 105.1 219 36.1
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 6.2e-21 105.1 219 36.5
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 8.1e-21 104.8 219 36.5
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 8.1e-21 104.8 219 36.5
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 8.1e-21 104.8 219 36.5
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 8.1e-21 104.8 219 36.5
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 8.1e-21 104.8 217 35.9
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 8.1e-21 104.8 219 36.5
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.1e-20 104.4 219 36.1
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 1.4e-20 104.0 184 39.1
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 1.8e-20 103.6 219 36.1
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 2.4e-20 103.2 219 36.1
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 3.1e-20 102.8 219 36.1
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 3.1e-20 102.8 184 38.6
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 3.1e-20 102.8 184 38.6
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 3.1e-20 102.8 184 38.6
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 3.1e-20 102.8 219 35.6
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 3.1e-20 102.8 217 35.9
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 4.0e-20 102.4 187 36.9
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 4.0e-20 102.4 225 34.2
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 5.3e-20 102.1 219 35.6
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 5.3e-20 102.1 219 35.2
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 6.9e-20 101.7 217 35.5
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 1.5e-19 100.5 219 36.1
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 2.6e-19 99.8 219 34.2
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 2.6e-19 99.8 219 35.2
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 3.4e-19 99.4 219 34.7
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 4.5e-19 99.0 219 34.2
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 4.5e-19 99.0 219 34.2
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 5.8e-19 98.6 216 34.7
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 5.8e-19 98.6 216 33.3
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 1.0e-18 97.8 213 35.2
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 1.7e-18 97.1 190 36.8
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 3.8e-18 95.9 211 35.5
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 4.9e-18 95.5 183 36.6
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 6.5e-18 95.1 219 32.9
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 2.1e-16 90.1 183 33.3
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 4.6e-16 89.0 219 32.0
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 4.6e-16 89.0 183 34.4
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 1.8e-15 87.0 219 31.5
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 2.3e-15 86.7 183 34.4
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 3.9e-15 85.9 219 30.6
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 3.9e-15 85.9 233 32.2
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 5.1e-15 85.5 219 31.5
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 6.7e-15 85.1 176 34.7
COL.COLO4_22276 Corchorus olitorius HOM05D001458 ORTHO05D006787 7.4e-14 81.6 153 35.9
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 2.8e-13 79.7 181 29.3
Lj5g0003554 Lotus japonicus HOM05D001458 ORTHO05D006787 3.7e-13 79.3 203 34.0
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 5.3e-12 75.5 219 26.0
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 2.9e-10 69.7 144 34.7
PSO210G4199 Papaver somniferum HOM05D001458 ORTHO05D007170 1.4e-09 67.4 218 27.5
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 2.5e-09 66.6 222 27.0
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 4.2e-09 65.9 128 37.5
FAN19G2533 Fragaria x ananassa HOM05D001458 ORTHO05D006787 4.2e-09 65.9 130 34.6
PSO210G1564 Papaver somniferum HOM05D001458 ORTHO05D007170 9.3e-09 64.7 218 26.6
FvH4_4g12771 Fragaria vesca HOM05D001458 ORTHO05D035488 1.2e-08 64.3 202 27.2
Carub.0003s1251 Capsella rubella HOM05D001458 ORTHO05D007170 1.6e-08 63.9 218 28.4
Aa31LG8G370 Aethionema arabicum HOM05D001458 ORTHO05D007170 2.7e-08 63.2 218 27.5
Thhalv10022332m.g Eutrema salsugineum HOM05D001458 ORTHO05D007170 2.7e-08 63.2 218 27.5
AT3G13170 Arabidopsis thaliana HOM05D001458 ORTHO05D007170 4.6e-08 62.4 218 27.5
RcHm_v2.0_Chr2g0089291 Rosa chinensis HOM05D001458 ORTHO05D020639 6.1e-08 62.0 171 28.7
THA.LOC104810290 Tarenaya hassleriana HOM05D001458 ORTHO05D007170 6.1e-08 62.0 203 27.6
AL3G24910 Arabidopsis lyrata HOM05D001458 ORTHO05D007170 7.9e-08 61.6 218 27.5
BraA01t04073Z Brassica rapa HOM05D001458 ORTHO05D007170 7.9e-08 61.6 218 27.5
Sc03g0011170 Simmondsia chinensis HOM05D001458 ORTHO05D007170 7.9e-08 61.6 220 27.3
BolC1t05139H Brassica oleracea HOM05D001458 ORTHO05D007170 1.0e-07 61.2 218 27.5
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 1.0e-07 61.2 222 26.6
Thecc.07G015600 Theobroma cacao HOM05D001458 ORTHO05D007170 1.0e-07 61.2 218 26.6
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 1.3e-07 60.8 218 25.7
MBI16_g22433_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D007170 1.3e-07 60.8 185 29.2
Nitab4.5_0000848g0030 Nicotiana tabacum HOM05D001458 ORTHO05D006787 1.3e-07 60.8 100 38.0
RcHm_v2.0_Chr5g0083311 Rosa chinensis HOM05D001458 ORTHO05D020639 1.3e-07 60.8 171 28.7
RcHm_v2.0_Chr5g0053841 Rosa chinensis HOM05D001458 ORTHO05D007170 1.8e-07 60.5 218 26.6
Os03g0752200 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D007170 3.0e-07 59.7 182 28.6
CARHR087750 Cardamine hirsuta HOM05D001458 ORTHO05D007170 3.9e-07 59.3 218 26.6
AUR62036436 Chenopodium quinoa HOM05D001458 ORTHO05D007170 3.9e-07 59.3 204 26.5
COL.COLO4_07102 Corchorus olitorius HOM05D001458 ORTHO05D007170 3.9e-07 59.3 218 26.1
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 5.1e-07 58.9 218 23.9
COL.COLO4_22275 Corchorus olitorius HOM05D001458 ORTHO05D006787 6.7e-07 58.5 118 33.1
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 6.7e-07 58.5 218 25.7
Cpa.g.sc12.160 Carica papaya HOM05D001458 ORTHO05D007170 8.7e-07 58.2 216 25.9
Nn1g03205 Nelumbo nucifera HOM05D001458 ORTHO05D007170 8.7e-07 58.2 221 24.9
C01p51920 Brassica napus HOM05D001458 ORTHO05D007170 1.1e-06 57.8 244 25.4
RcHm_v2.0_Chr2g0089851 Rosa chinensis HOM05D001458 ORTHO05D020639 1.1e-06 57.8 179 27.4
SMO239G0116 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 1.1e-06 57.8 218 26.6
TWI39G0056 Tripterygium wilfordii HOM05D001458 ORTHO05D007170 1.5e-06 57.4 181 29.3
Lj8A178T76 Lonicera japonica HOM05D001458 ORTHO05D007170 1.9e-06 57.0 222 27.0
Phvul.008G278300 Phaseolus vulgaris HOM05D001458 ORTHO05D007170 2.5e-06 56.6 183 27.9
A01p40380 Brassica napus HOM05D001458 ORTHO05D007170 4.3e-06 55.8 242 25.2
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 4.3e-06 55.8 218 25.2
VMungo0647G0207 Vigna mungo HOM05D001458 ORTHO05D007170 4.3e-06 55.8 183 27.3
Actinidia35397 Actinidia chinensis HOM05D001458 ORTHO05D007170 5.7e-06 55.5 224 25.4
CSS0006064 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 5.7e-06 55.5 183 26.2
Ciclev10010322m.g Citrus clementina HOM05D001458 ORTHO05D007170 5.7e-06 55.5 223 26.5
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 5.7e-06 55.5 183 27.3
CSS0027160 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 7.4e-06 55.1 183 26.2
RcHm_v2.0_Chr2g0086091 Rosa chinensis HOM05D001458 ORTHO05D020639 7.4e-06 55.1 215 24.7
Sp2g00700 Schrenkiella parvula HOM05D001458 ORTHO05D008462 7.4e-06 55.1 218 27.1
Potri.001G366700 Populus trichocarpa HOM05D001458 ORTHO05D007170 9.7e-06 54.7 218 25.2


User provided reference genes

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