Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.3e-237 825.5 507 100.0
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.7e-155 552.4 510 69.0
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 5.6e-135 485.3 475 59.2
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 9.9e-92 341.7 340 52.9
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 2.9e-91 340.1 310 55.2
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 8.4e-91 338.6 293 57.7
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.4e-90 337.8 320 53.1
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.4e-90 337.0 340 51.5
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.4e-90 337.0 340 51.5
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 4.2e-90 336.3 361 50.4
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.5e-90 335.9 340 52.6
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 7.1e-90 335.5 284 57.7
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 7.1e-90 335.5 284 57.7
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 3.5e-89 333.2 305 55.7
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 7.9e-89 332.0 303 54.1
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 7.9e-89 332.0 305 55.7
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 3.9e-88 329.7 305 55.4
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 6.7e-88 328.9 303 54.1
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 8.7e-88 328.6 327 51.7
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.7e-88 328.6 292 55.8
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.9e-87 327.4 276 54.7
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.6e-86 324.3 305 53.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 1.6e-86 324.3 362 48.3
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.6e-86 324.3 284 55.3
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.8e-86 323.6 288 54.9
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 3.7e-86 323.2 293 54.9
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.7e-86 323.2 284 56.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.1e-85 321.6 340 48.2
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.1e-85 321.6 353 48.7
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.8e-85 320.9 294 53.4
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 2.4e-85 320.5 303 52.8
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.4e-85 320.5 292 54.1
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 2.4e-85 320.5 288 54.5
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 3.1e-85 320.1 346 49.4
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 4.0e-85 319.7 282 55.3
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 4.0e-85 319.7 285 54.7
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 5.3e-85 319.3 353 48.4
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 5.3e-85 319.3 291 53.3
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.9e-85 318.9 282 55.3
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 6.9e-85 318.9 285 54.4
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 9.0e-85 318.5 294 53.4
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 9.0e-85 318.5 362 48.3
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 9.0e-85 318.5 256 58.6
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.2e-84 318.2 348 49.7
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.2e-84 318.2 267 56.2
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 2.0e-84 317.4 349 49.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 2.6e-84 317.0 294 53.1
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.6e-84 317.0 306 51.6
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 3.4e-84 316.6 305 51.5
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 4.5e-84 316.2 355 49.6
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 1.0e-83 315.1 288 53.5
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.2e-83 313.9 294 52.7
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.2e-83 313.9 294 52.7
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 2.9e-83 313.5 311 52.4
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.9e-83 313.5 359 48.5
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.8e-83 313.2 307 51.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 3.8e-83 313.2 355 47.6
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 8.4e-83 312.0 265 57.4
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.4e-82 311.2 341 49.9
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.9e-82 310.8 250 59.6
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 3.2e-82 310.1 269 56.9
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 3.2e-82 310.1 359 47.9
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.5e-82 309.3 306 49.7
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 7.1e-82 308.9 284 54.6
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 7.1e-82 308.9 259 56.4
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 9.3e-82 308.5 323 48.0
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.2e-81 308.1 358 46.4
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.2e-81 308.1 342 48.0
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.6e-81 307.8 313 48.9
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 2.7e-81 307.0 359 47.6
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 4.6e-81 306.2 326 46.6
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 7.9e-81 305.4 311 50.5
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 7.9e-81 305.4 293 52.9
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.0e-80 305.1 356 45.5
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.8e-80 304.3 317 48.3
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 2.3e-80 303.9 381 43.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 3.0e-80 303.5 391 43.2
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 3.0e-80 303.5 397 43.8
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 8.7e-80 302.0 290 51.7
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.9e-79 300.8 351 45.6
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 3.3e-79 300.1 256 56.2
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 5.7e-79 299.3 266 54.9
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 7.4e-79 298.9 282 52.5
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 9.6e-79 298.5 322 47.5
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 9.6e-79 298.5 360 45.6
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 3.7e-78 296.6 367 45.2
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.8e-77 294.3 450 40.2
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.4e-76 290.0 288 52.1
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.3e-75 288.1 354 43.8
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 2.2e-75 287.3 391 41.9
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 6.5e-75 285.8 280 52.1
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.1e-74 285.0 359 44.8
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 4.2e-74 283.1 441 39.7
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 4.3e-71 273.1 222 60.4
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 5.7e-71 272.7 319 43.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 6.3e-70 269.2 339 44.8
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.3e-67 261.5 223 57.4
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.7e-67 261.2 223 57.8
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 6.5e-67 259.2 323 44.0
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.1e-66 258.5 298 44.6
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 4.2e-66 256.5 234 54.7
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 1.1e-61 241.9 223 50.2
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 2.6e-60 237.3 404 37.9
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 7.9e-57 225.7 320 42.2
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 5.1e-56 223.0 207 53.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.1e-55 221.9 312 38.5
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 2.8e-54 217.2 270 39.3
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.7e-54 216.9 279 45.2
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.9e-50 204.5 267 43.8
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 1.1e-42 178.7 168 51.8
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.0e-40 172.2 216 44.4
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 5.2e-40 169.9 404 30.2
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 2.3e-32 144.4 113 60.2
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.2e-30 137.9 113 58.4
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 8.6e-27 125.9 93 58.1
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-24 118.2 115 49.6
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.3e-24 117.9 358 28.8
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 2.0e-23 114.8 76 67.1
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 6.4e-22 109.8 77 62.3
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 5.4e-21 106.7 77 61.0
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.7e-20 104.4 77 59.7
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.9e-14 84.3 102 47.1
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.6e-10 70.1 81 44.4
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 2.1e-09 68.2 92 40.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.0e-08 63.9 126 33.3
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 2.6e-07 61.2 70 44.3
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 5.8e-07 60.1 54 48.1
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 1.3e-06 58.9 113 34.5
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 3.7e-06 57.4 137 29.9


User provided reference genes

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