Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 9.7e-110 400.2 209 100.0
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.6e-51 206.8 201 53.7
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 2.1e-51 206.5 199 57.8
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.7e-51 206.1 187 57.2
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 6.0e-51 204.9 187 57.2
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 7.8e-51 204.5 201 56.2
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.3e-50 203.8 193 57.5
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.3e-50 203.8 187 57.2
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.3e-50 203.0 187 57.2
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.3e-50 203.0 191 57.1
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.0e-50 202.6 174 59.2
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.0e-50 202.6 187 56.7
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.9e-50 202.2 196 56.6
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.9e-50 202.2 196 56.6
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 3.9e-50 202.2 183 56.8
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 3.9e-50 202.2 183 56.8
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.9e-50 202.2 183 56.8
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 3.9e-50 202.2 183 56.8
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 5.1e-50 201.8 187 56.1
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-50 201.8 201 54.7
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 187 56.1
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 196 56.1
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 196 56.1
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 196 56.1
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 196 56.1
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 8.6e-50 201.1 196 56.1
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.1e-49 200.7 196 56.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.1e-49 200.7 195 55.9
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.5e-49 200.3 185 57.8
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.9e-49 199.9 185 56.8
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.5e-49 199.5 193 56.0
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 2.5e-49 199.5 193 56.0
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.5e-49 199.5 178 59.6
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 3.3e-49 199.1 179 58.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.3e-49 198.7 183 55.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.2e-48 197.2 148 66.2
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 2.1e-48 196.4 151 64.2
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 2.8e-48 196.1 201 53.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.8e-48 196.1 187 55.6
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 4.7e-48 195.3 150 64.7
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 4.7e-48 195.3 171 59.1
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-48 194.9 146 66.4
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-47 194.1 194 55.2
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.1e-47 194.1 181 56.9
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 1.4e-47 193.7 167 58.7
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.8e-47 193.4 174 58.0
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.8e-47 193.4 174 58.0
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.8e-47 193.4 174 58.0
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 5.2e-47 191.8 156 62.2
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 6.8e-47 191.4 201 51.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 8.9e-47 191.0 150 62.7
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-46 190.3 188 55.3
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.5e-46 190.3 156 60.9
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.6e-46 189.5 187 54.0
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.6e-46 189.5 187 54.0
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.6e-46 189.5 187 54.0
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 2.6e-46 189.5 191 53.4
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 3.4e-46 189.1 187 52.9
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 3.4e-46 189.1 195 52.8
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.4e-46 188.7 151 61.6
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.4e-46 188.7 151 61.6
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 9.9e-46 187.6 187 53.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 9.9e-46 187.6 187 53.5
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.7e-45 186.8 172 57.6
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 4.9e-45 185.3 144 65.3
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.9e-45 185.3 173 57.8
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-44 184.1 148 61.5
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 7.1e-44 181.4 144 63.2
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 7.1e-44 181.4 144 63.2
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.7e-42 176.8 188 53.2
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 8.7e-42 174.5 143 62.2
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.9e-41 173.3 135 63.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.9e-41 173.3 173 54.9
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.6e-41 171.8 127 70.1
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.6e-41 171.8 127 70.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 5.6e-41 171.8 179 54.7
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.6e-40 170.2 137 64.2
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 3.1e-39 166.0 187 48.1
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.9e-39 164.9 127 67.7
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 4.2e-36 155.6 160 53.1
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.0e-34 151.0 139 57.6
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 8.1e-32 141.4 184 47.8
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 1.8e-31 140.2 130 57.7
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.0e-31 137.9 124 56.5
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 4.5e-30 135.6 113 63.7
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 7.6e-30 134.8 151 50.3
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 7.6e-30 134.8 138 56.5
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 9.9e-30 134.4 144 52.8
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.9e-30 134.4 201 41.3
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 2.4e-28 129.8 105 62.9
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.2e-27 127.5 88 75.0
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 3.5e-27 125.9 88 72.7
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 1.3e-26 124.0 81 77.8
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 1.8e-26 123.6 109 62.4
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-26 123.6 118 59.3
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.1e-26 122.1 117 52.1
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.9e-25 120.2 81 76.5
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 2.5e-25 119.8 82 74.4
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 5.6e-25 118.6 81 75.3
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 5.6e-25 118.6 81 75.3
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 7.4e-25 118.2 106 59.4
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 2.1e-24 116.7 81 74.1
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.1e-24 116.7 105 60.0
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.7e-24 115.9 88 67.0
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 8.1e-24 114.8 107 56.1
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.1e-23 114.4 71 78.9
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-23 112.8 84 71.4
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.5e-22 110.5 106 50.0
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-21 106.7 81 72.8
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 8.4e-21 104.8 94 60.6
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 7.1e-20 101.7 70 71.4
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.6e-19 100.5 91 58.2
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 6.0e-19 98.6 70 72.9
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 7.9e-19 98.2 75 66.7
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 5.1e-18 95.5 66 74.2
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 7.4e-17 91.7 145 37.9
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.1e-16 90.1 60 73.3
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 3.7e-16 89.4 107 51.4
Migut.D01414 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-15 87.8 86 48.8
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.1e-15 87.8 53 79.2
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.1e-15 87.8 54 77.8
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.1e-15 87.8 54 77.8
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.4e-15 87.4 52 80.8
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.4e-15 87.4 52 80.8
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.4e-15 87.4 61 73.8
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 2.4e-15 86.7 89 48.3
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.0e-15 85.9 52 78.8
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 5.3e-15 85.5 53 77.4
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 9.0e-15 84.7 63 73.0
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.0e-15 84.7 50 82.0
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.0e-15 84.7 50 82.0
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.0e-15 84.7 50 82.0
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.0e-15 84.7 50 82.0
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.0e-15 84.7 50 82.0
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 1.5e-14 84.0 60 70.0
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.0e-14 83.6 77 53.2
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 2.6e-14 83.2 63 69.8
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 5.8e-14 82.0 60 66.7
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 5.8e-14 82.0 77 50.6
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 7.6e-14 81.6 91 53.8
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 1.7e-13 80.5 97 51.5
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 2.2e-13 80.1 78 59.0
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-13 80.1 63 68.3
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 6.5e-13 78.6 80 46.2
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 1.1e-12 77.8 74 50.0
SEGI_15522 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.2e-12 76.3 58 63.8
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 5.5e-12 75.5 68 50.0
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-11 73.2 70 44.3
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.7e-11 73.2 78 55.1
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.0e-10 69.7 68 44.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.1e-09 67.8 67 58.2
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.1e-09 67.8 67 58.2
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 1.1e-09 67.8 67 58.2
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 1.9e-09 67.0 38 81.6
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.9e-09 67.0 47 74.5
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 2.5e-09 66.6 51 66.7
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.7e-09 65.5 40 75.0
CARHR056710 Cardamine hirsuta HOM05D000216 ORTHO05D000634 9.7e-09 64.7 60 60.0
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.6e-08 63.9 74 45.9
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.8e-08 62.4 179 27.9
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.6e-06 56.6 38 78.9
Solyc04g018250.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.5e-06 55.8 52 53.8
arahy.Tifrunner.gnm1.ann1.7FJY1D Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-05 54.7 54 53.7


User provided reference genes

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