Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 4.4e-217 757.7 388 100.0
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 5.6e-119 431.8 386 57.5
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 7.3e-119 431.4 386 56.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 9.5e-119 431.0 386 57.0
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.2e-118 430.6 386 57.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.2e-118 430.6 386 57.0
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 1.6e-118 430.3 389 57.6
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.1e-118 429.9 386 56.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 8.1e-118 427.9 386 55.4
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 3.1e-117 426.0 387 56.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 5.2e-117 425.2 387 55.8
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.9e-117 424.5 387 55.0
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.0e-116 423.3 386 57.8
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.4e-116 422.2 386 55.2
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 9.9e-116 421.0 386 54.9
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.3e-115 420.6 386 54.7
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.3e-115 420.6 386 55.2
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 1.7e-115 420.2 386 53.9
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 3.7e-115 419.1 386 54.9
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 4.9e-115 418.7 387 54.3
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 8.3e-115 417.9 386 53.9
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.1e-114 417.5 386 56.5
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.9e-114 416.8 387 56.6
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.4e-114 416.4 386 55.2
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.4e-114 416.4 393 55.5
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 3.2e-114 416.0 387 54.3
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 3.2e-114 416.0 387 54.3
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 7.1e-114 414.8 387 54.0
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 9.2e-114 414.5 387 54.0
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.2e-113 414.1 386 55.7
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.2e-113 414.1 387 54.8
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.1e-113 413.3 386 56.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.7e-113 412.9 387 54.3
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 3.5e-113 412.5 386 54.1
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.6e-113 412.1 386 54.1
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 6.0e-113 411.8 386 55.4
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 7.8e-113 411.4 387 53.7
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 7.8e-113 411.4 390 55.6
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.0e-112 411.0 386 53.9
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.0e-112 411.0 386 54.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.0e-112 411.0 387 55.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.3e-112 410.6 395 55.2
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.7e-112 410.2 386 53.6
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 2.3e-112 409.8 386 54.9
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.3e-112 409.8 393 53.2
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 3.0e-112 409.5 386 53.9
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 3.0e-112 409.5 395 54.9
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 3.9e-112 409.1 387 53.5
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.9e-112 409.1 389 54.2
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 6.6e-112 408.3 390 54.1
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 8.6e-112 407.9 386 54.4
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 8.6e-112 407.9 386 54.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 8.6e-112 407.9 386 54.9
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-111 407.5 390 54.4
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.5e-111 407.1 386 54.1
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.9e-111 406.8 386 53.1
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.9e-111 406.8 375 54.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.5e-111 406.4 395 54.2
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 4.3e-111 405.6 398 54.0
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 9.5e-111 404.4 388 55.7
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 1.6e-110 403.7 387 53.2
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 3.6e-110 402.5 388 55.4
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.7e-110 402.1 386 55.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 8.1e-110 401.4 386 53.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 8.1e-110 401.4 386 53.6
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.4e-109 400.6 388 54.6
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.4e-109 400.6 388 54.6
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.4e-109 400.6 387 53.0
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 2.4e-109 399.8 384 53.6
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.1e-109 399.4 387 54.5
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.0e-109 399.1 392 53.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.2e-109 398.7 398 53.8
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 5.2e-109 398.7 392 53.3
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.5e-108 397.1 386 54.1
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.6e-108 396.4 397 52.6
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.4e-108 396.0 390 54.4
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.4e-108 396.0 386 52.1
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 4.4e-108 395.6 382 54.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 5.8e-108 395.2 376 53.7
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.8e-108 395.2 386 53.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 7.6e-108 394.8 382 53.7
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.9e-106 390.2 383 52.0
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.9e-106 390.2 386 52.3
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 7.1e-106 388.3 386 52.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.2e-105 387.5 387 52.7
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 2.7e-105 386.3 387 51.9
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.7e-105 386.3 385 51.2
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.0e-104 384.4 387 51.4
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.0e-104 382.9 386 51.0
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 6.6e-104 381.7 387 51.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 3.3e-103 379.4 415 49.6
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 9.6e-103 377.9 387 51.2
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 6.2e-102 375.2 387 50.4
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.0e-101 372.5 385 50.1
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 5.3e-101 372.1 385 52.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.2e-100 370.9 386 50.0
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.5e-100 370.5 389 50.4
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 2.0e-100 370.2 387 50.6
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 2.6e-100 369.8 389 50.1
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 4.4e-100 369.0 388 49.7
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 4.9e-99 365.5 388 51.0
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 6.4e-99 365.2 388 50.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.4e-98 364.0 387 49.9
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.9e-98 363.6 380 48.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.9e-98 363.6 388 50.5
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 1.9e-98 363.6 388 49.7
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 4.2e-98 362.5 388 49.7
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.6e-97 360.5 387 50.4
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 3.5e-97 359.4 387 48.8
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.3e-96 357.5 388 49.2
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 6.6e-96 355.1 257 65.4
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.5e-95 353.2 387 48.6
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.9e-92 341.3 340 52.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 4.2e-90 335.9 360 50.3
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.2e-90 335.9 343 51.9
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 7.1e-90 335.1 380 48.2
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.8e-88 330.5 298 56.0
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.3e-83 314.3 381 45.4
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.3e-79 299.3 340 48.8
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 8.4e-75 285.0 386 43.3
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.3e-70 268.9 297 47.5
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.6e-68 263.5 162 79.0
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.7e-68 261.9 193 67.4
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 4.2e-66 256.1 330 43.3
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 7.9e-65 251.9 256 49.6
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 3.3e-63 246.5 375 40.3
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.8e-62 243.4 317 43.5
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.9e-61 238.8 152 75.0
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.5e-58 230.3 333 42.0
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 8.8e-56 221.9 258 46.9
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.0e-51 208.4 237 50.2
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 3.6e-49 199.9 181 53.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-46 190.3 336 37.8
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.4e-39 166.4 148 58.1
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.9e-35 153.7 167 47.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 3.8e-35 153.3 221 38.0
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.6e-33 146.7 167 47.3
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.9e-30 136.3 132 56.1
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-29 135.2 132 55.3
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.7e-27 127.9 121 54.5
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.3e-26 123.6 82 72.0
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.4e-21 107.5 84 61.9
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.4e-21 107.5 172 36.0
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.7e-14 84.7 84 41.7
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 7.0e-13 79.3 51 66.7
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 7.0e-13 79.3 51 66.7
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 4.3e-10 70.1 44 70.5
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 4.3e-10 70.1 44 70.5
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-08 65.5 150 27.3
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 4.9e-06 56.6 44 50.0
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 6.4e-06 56.2 44 47.7


User provided reference genes

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