Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.2e-89 331.3 308 100.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.9e-88 328.2 308 96.1
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.9e-88 328.2 308 96.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.5e-53 212.2 271 76.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.4e-40 171.0 165 64.8
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.0e-38 162.5 281 47.3
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.1e-37 161.4 281 47.3
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.3e-37 159.8 172 54.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 4.2e-37 159.5 177 52.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.5e-37 158.3 281 45.2
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.5e-37 158.3 177 56.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.6e-36 157.5 174 54.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 2.1e-36 157.1 163 54.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.8e-36 156.8 175 53.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.8e-36 156.8 168 54.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.7e-36 156.0 176 52.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 4.7e-36 156.0 193 50.8
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-35 154.5 193 49.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-35 154.5 193 49.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.4e-35 154.5 178 50.6
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.4e-35 154.5 177 57.6
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-35 154.5 174 69.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-35 154.5 174 69.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.0e-35 152.9 263 44.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 4.0e-35 152.9 175 50.9
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.2e-35 152.5 261 47.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.8e-35 152.1 160 50.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 6.8e-35 152.1 245 44.1
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 6.8e-35 152.1 159 54.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.5e-34 151.0 163 54.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.5e-34 151.0 252 47.2
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.5e-34 151.0 197 50.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.5e-34 151.0 188 51.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.5e-34 151.0 158 51.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.5e-34 151.0 277 40.8
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-34 150.6 168 52.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.0e-34 150.6 177 50.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.0e-34 150.6 175 50.9
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.0e-34 150.6 204 51.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.6e-34 150.2 170 50.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.6e-34 150.2 176 50.6
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.4e-34 149.8 163 55.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.4e-34 149.8 153 55.6
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.4e-34 149.8 193 49.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 4.4e-34 149.4 174 51.1
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 7.5e-34 148.7 163 53.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 7.5e-34 148.7 163 53.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 7.5e-34 148.7 281 44.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 7.5e-34 148.7 167 50.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 7.5e-34 148.7 176 50.6
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 9.8e-34 148.3 177 49.7
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.8e-34 148.3 175 50.9
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-33 147.9 163 52.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-33 147.9 163 52.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.3e-33 147.9 163 52.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.3e-33 147.9 171 51.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-33 147.9 170 52.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.3e-33 147.9 277 43.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.7e-33 147.5 162 50.6
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.2e-33 147.1 174 50.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.2e-33 147.1 154 53.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.8e-33 146.7 171 50.9
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.8e-33 146.7 145 55.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.8e-33 146.7 177 50.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.8e-33 146.7 175 50.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.8e-33 146.7 165 50.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.7e-33 146.4 171 50.9
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.7e-33 146.4 153 53.6
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.7e-33 146.4 168 50.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.7e-33 146.4 177 50.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.7e-33 146.4 160 50.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 3.7e-33 146.4 160 50.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.9e-33 146.0 168 51.2
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.9e-33 146.0 168 50.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.9e-33 146.0 202 48.0
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 4.9e-33 146.0 173 50.9
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 6.3e-33 145.6 172 50.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.3e-33 145.2 284 43.7
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-32 144.8 163 52.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.1e-32 144.8 163 52.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.1e-32 144.8 155 53.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.1e-32 144.8 280 50.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-32 144.8 155 63.2
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-32 144.4 153 52.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-32 144.4 153 52.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-32 144.4 154 53.2
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.4e-32 144.4 155 52.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.8e-32 144.1 159 53.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-32 144.1 154 52.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.8e-32 144.1 147 55.8
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.4e-32 143.7 171 50.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 2.4e-32 143.7 274 43.8
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.4e-32 143.7 170 48.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.1e-32 143.3 160 50.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.1e-32 142.9 153 52.3
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.1e-32 142.9 153 52.3
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 4.1e-32 142.9 164 51.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 4.1e-32 142.9 153 52.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.1e-32 142.9 145 54.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 4.1e-32 142.9 200 46.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 5.4e-32 142.5 153 53.6
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.4e-32 142.5 206 44.2
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.4e-32 142.5 149 60.4
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 7.0e-32 142.1 169 49.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 7.0e-32 142.1 173 48.6
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 9.2e-32 141.7 190 52.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.2e-32 141.7 146 52.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.2e-31 141.4 146 52.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.6e-31 141.0 169 49.7
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.7e-31 140.2 228 46.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.7e-31 140.2 163 49.7
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.7e-31 140.2 179 57.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.5e-31 139.8 170 51.2
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.5e-31 139.8 182 54.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.5e-31 139.8 179 69.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-31 139.4 248 46.0
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.5e-31 139.4 148 52.7
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.9e-31 139.0 142 51.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.8e-31 138.7 148 54.1
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.7e-30 137.5 165 49.7
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.7e-30 137.5 147 60.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.7e-30 137.5 248 48.4
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.7e-30 137.5 248 48.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-30 137.5 169 47.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-30 136.7 244 47.5
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.9e-30 136.7 286 40.2
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.9e-30 136.3 179 45.3
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-30 136.3 182 48.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-30 136.3 182 48.4
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.6e-30 135.6 151 50.3
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.6e-30 135.6 171 48.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 8.6e-30 135.2 283 45.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.1e-29 134.8 152 49.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.8 134 52.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.8 134 53.0
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.5e-29 134.4 154 55.2
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-29 133.7 151 51.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-29 133.7 151 51.7
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-29 132.9 272 45.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-29 132.9 241 46.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-28 131.3 137 51.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.0e-27 126.3 153 62.1
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.4e-26 123.2 298 45.3
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.4e-26 123.2 158 50.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.2e-23 114.8 164 44.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.0e-22 111.7 152 44.7
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-21 107.1 160 51.2
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.6e-20 104.4 148 46.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.1e-19 100.1 56 83.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.8e-19 99.0 123 45.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-17 94.0 133 45.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-16 91.7 109 47.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.9e-16 90.9 53 79.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 4.1e-16 89.7 167 43.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.4e-16 89.4 123 44.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 6.0e-15 85.9 51 70.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-14 85.1 57 68.4
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.8e-11 74.3 40 87.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.5e-10 68.9 40 77.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.1e-08 62.4 94 39.4
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-07 60.5 66 56.1
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.5e-07 60.1 63 57.1


User provided reference genes

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