Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.6e-95 352.8 308 100.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.6e-95 352.8 308 100.0
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.4e-85 320.5 308 96.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.0e-58 230.3 271 79.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 9.1e-40 168.3 165 64.2
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.9e-39 165.6 281 47.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.3e-38 164.5 281 47.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.9e-38 163.3 281 46.6
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.6e-38 161.8 201 51.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.6e-36 157.5 263 45.6
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.6e-36 157.5 168 54.2
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.1e-36 157.1 192 50.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-36 157.1 192 67.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-36 157.1 192 67.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 2.8e-36 156.8 163 54.6
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 6.1e-36 155.6 183 52.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.0e-35 154.8 197 51.3
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.4e-35 154.5 192 52.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.8e-35 154.1 203 52.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.0e-35 153.3 261 48.3
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.0e-35 153.3 254 48.4
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.0e-35 153.3 166 62.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 4.0e-35 152.9 217 47.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 6.8e-35 152.1 248 43.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 6.8e-35 152.1 159 54.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.9e-35 151.8 160 50.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.9e-35 151.8 192 50.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 8.9e-35 151.8 192 50.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.2e-34 151.4 247 49.8
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.5e-34 151.0 163 54.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.5e-34 151.0 192 51.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.5e-34 151.0 158 51.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.5e-34 151.0 277 41.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.6e-34 150.2 185 56.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.6e-34 150.2 215 47.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.6e-34 150.2 190 51.1
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.4e-34 149.8 163 55.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.4e-34 149.4 167 50.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 4.4e-34 149.4 176 50.6
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-34 149.1 193 50.3
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-34 149.1 193 50.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 5.7e-34 149.1 203 49.3
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.5e-34 148.7 175 53.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 7.5e-34 148.7 191 50.8
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 9.8e-34 148.3 174 51.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.7e-33 147.5 162 50.6
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.7e-33 147.5 196 49.5
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.7e-33 147.5 174 50.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-33 147.5 197 49.7
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.2e-33 147.1 192 49.5
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.8e-33 146.7 174 51.1
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.8e-33 146.7 195 50.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.8e-33 146.7 212 50.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.8e-33 146.7 154 53.2
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.7e-33 146.4 177 50.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.7e-33 146.4 188 51.1
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.9e-33 146.0 188 49.5
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 6.3e-33 145.6 231 42.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 6.3e-33 145.6 187 51.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.3e-33 145.6 208 46.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 8.3e-33 145.2 188 50.5
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.1e-32 144.8 182 48.9
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.1e-32 144.8 158 50.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.1e-32 144.8 158 50.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-32 144.8 155 63.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-32 144.4 184 49.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.8e-32 144.1 153 52.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.8e-32 144.1 153 52.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-32 144.1 154 53.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-32 144.1 208 48.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.4e-32 143.7 159 53.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.4e-32 143.7 154 52.6
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-32 143.3 183 49.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.1e-32 143.3 196 48.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.1e-32 143.3 156 50.6
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.1e-32 142.9 171 50.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 4.1e-32 142.9 149 60.4
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.1e-32 142.9 145 54.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.4e-32 142.5 199 47.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 5.4e-32 142.5 153 52.3
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 5.4e-32 142.5 180 50.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.0e-32 142.1 146 52.7
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 7.0e-32 142.1 202 47.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 9.2e-32 141.7 204 48.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 9.2e-32 141.7 190 47.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-31 141.4 182 50.0
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.2e-31 141.4 187 48.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.2e-31 141.4 187 48.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.6e-31 141.0 180 47.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-31 141.0 190 47.9
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-31 141.0 190 47.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.6e-31 141.0 202 53.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.6e-31 141.0 191 56.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-31 140.6 186 47.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.0e-31 140.6 198 47.5
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 2.7e-31 140.2 169 49.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.7e-31 140.2 191 48.2
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 2.7e-31 140.2 291 39.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.7e-31 140.2 211 46.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.7e-31 140.2 183 69.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-31 139.8 190 47.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.5e-31 139.8 190 47.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.5e-31 139.8 214 45.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.5e-31 139.8 148 52.7
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.5e-31 139.8 199 46.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 4.5e-31 139.4 237 42.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-31 139.4 218 50.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.9e-31 139.0 148 54.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 5.9e-31 139.0 188 48.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.9e-31 139.0 142 51.4
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.9e-31 139.0 193 47.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 7.8e-31 138.7 231 43.3
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 7.8e-31 138.7 188 48.4
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 7.8e-31 138.7 170 51.8
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.3e-30 137.9 147 60.5
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.3e-30 137.9 198 53.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.7e-30 137.5 189 48.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-30 137.5 177 47.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.9e-30 136.7 174 48.9
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.9e-30 136.7 190 46.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.0e-30 136.0 151 50.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 8.6e-30 135.2 204 44.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 8.6e-30 135.2 286 40.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.1e-29 134.8 152 49.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.8 134 52.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.8 134 53.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.5e-29 134.4 218 49.1
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-29 134.4 218 46.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-29 134.4 218 49.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.5e-29 134.4 154 55.2
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-29 134.0 151 51.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-29 134.0 151 51.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 4.3e-29 132.9 209 45.0
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.3e-29 132.9 175 48.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.6e-29 132.5 235 47.2
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-28 131.3 137 51.8
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.8e-28 130.2 231 41.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 3.6e-28 129.8 245 43.3
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-28 129.8 241 45.2
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 6.1e-28 129.0 276 43.1
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.2e-27 125.9 238 44.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.5e-26 124.4 168 58.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.9e-25 119.4 286 46.9
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-24 117.5 182 45.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 7.8e-23 112.1 163 44.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.0e-22 111.7 152 44.7
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.8e-20 103.6 190 48.4
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.1e-19 100.1 157 46.5
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.1e-19 100.1 56 83.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.8e-19 99.0 123 45.5
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.9e-16 90.9 53 79.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.4e-16 90.5 184 40.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-16 90.5 167 41.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.4e-16 89.4 123 44.7
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-15 88.2 143 44.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 6.0e-15 85.9 51 70.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-14 85.1 57 68.4
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.8e-11 74.3 40 87.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.5e-10 68.9 40 77.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-07 61.2 169 34.9
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 5.1e-06 56.2 75 54.7


User provided reference genes

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