Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 7.6e-155 550.4 273 100.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.3e-66 257.3 259 51.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 7.5e-62 241.5 261 47.5
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.6e-49 198.0 256 42.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.6e-48 197.2 262 42.4
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.2e-48 195.3 262 40.5
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.8e-47 193.7 265 41.1
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 4.0e-47 192.6 268 39.9
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 5.2e-47 192.2 262 40.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.8e-47 191.8 260 40.0
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.9e-47 191.4 259 39.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 8.9e-47 191.4 258 43.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.2e-46 191.0 262 42.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-46 190.7 268 39.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.6e-46 189.9 261 41.4
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.4e-46 189.5 262 38.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.4e-46 189.5 261 40.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.4e-46 189.5 272 38.6
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.4e-46 189.1 262 39.7
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.4e-46 189.1 261 40.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.8e-46 188.7 268 39.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 5.8e-46 188.7 262 39.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.8e-46 188.7 262 38.9
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.8e-46 188.7 263 39.9
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 9.9e-46 188.0 261 40.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.9e-46 188.0 261 40.6
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.3e-45 187.6 259 39.8
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.7e-45 187.2 258 41.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.7e-45 187.2 262 38.5
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.7e-45 187.2 261 40.6
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.7e-45 187.2 259 39.8
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.2e-45 186.8 261 40.2
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.2e-45 186.8 259 39.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.2e-45 186.8 261 40.6
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-45 186.4 261 40.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-45 186.4 261 40.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.9e-45 185.7 266 37.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 4.9e-45 185.7 260 37.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.4e-45 185.3 258 39.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 8.4e-45 184.9 260 39.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-44 184.5 258 39.5
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.1e-44 184.5 261 39.5
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.1e-44 184.5 262 39.7
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.4e-44 183.3 261 38.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.2e-44 183.0 271 39.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.2e-44 182.6 265 37.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 5.4e-44 182.2 263 38.8
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.1e-44 181.8 260 39.2
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 9.3e-44 181.4 264 39.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 9.3e-44 181.4 264 39.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.3e-44 181.4 261 38.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.2e-43 181.0 256 37.9
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.2e-43 181.0 263 38.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 1.6e-43 180.6 262 38.2
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.1e-43 180.3 263 38.8
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.1e-43 180.3 259 39.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.1e-43 180.3 261 39.1
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.1e-43 180.3 271 39.5
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.7e-43 179.9 263 39.2
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.7e-43 179.9 271 39.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.5e-43 179.5 268 38.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 4.6e-43 179.1 263 38.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 4.6e-43 179.1 263 38.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 6.0e-43 178.7 271 39.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.8e-43 178.3 263 38.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.8e-43 178.3 266 37.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 7.8e-43 178.3 264 38.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.8e-43 178.3 262 38.5
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.8e-43 178.3 262 38.5
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-42 177.9 270 39.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.3e-42 177.6 260 38.8
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.7e-42 177.2 265 38.5
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.7e-42 177.2 264 39.4
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.0e-42 176.4 262 37.8
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.9e-42 176.0 263 37.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.9e-42 176.0 267 39.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.9e-42 176.0 263 37.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 8.7e-42 174.9 269 38.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 8.7e-42 174.9 226 43.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 8.7e-42 174.9 261 38.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-41 174.5 262 35.9
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.1e-41 174.5 263 37.3
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.5e-41 174.1 258 39.1
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.9e-41 173.7 263 38.0
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.9e-41 173.7 253 37.9
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-41 173.3 262 36.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.5e-41 173.3 273 37.7
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.5e-41 173.3 262 39.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.3e-41 172.9 260 38.8
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 4.3e-41 172.6 267 37.5
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 7.3e-41 171.8 271 37.6
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 9.6e-41 171.4 272 36.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 9.6e-41 171.4 280 37.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.6e-41 171.4 266 38.0
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.3e-40 171.0 268 37.7
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.3e-40 171.0 266 37.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.6e-40 170.6 266 36.8
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-40 170.6 263 38.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.6e-40 170.6 265 38.9
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.8e-40 169.9 261 38.7
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 3.6e-40 169.5 259 37.5
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.6e-40 169.5 266 37.6
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.8e-40 169.1 263 38.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.2e-40 168.7 267 36.0
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.2e-40 168.7 267 36.0
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.2e-40 168.7 248 39.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.1e-39 167.9 274 37.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.1e-39 167.9 266 36.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.8e-39 167.2 264 37.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.4e-39 166.8 271 37.3
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.1e-39 166.4 267 36.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.0e-39 166.0 267 36.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.0e-39 164.9 259 37.5
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 9.0e-39 164.9 266 36.5
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.2e-38 164.5 266 36.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-38 164.1 270 36.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-38 164.1 270 36.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-38 164.1 268 34.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.5e-38 164.1 268 34.7
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.5e-38 164.1 266 36.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-38 164.1 270 36.3
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.6e-38 163.3 257 38.1
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.6e-38 163.3 267 36.0
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.4e-38 162.9 259 35.9
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.4e-38 162.5 230 37.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 7.6e-38 161.8 262 37.8
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.6e-38 161.8 267 34.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 7.6e-38 161.8 259 36.7
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.6e-38 161.8 267 35.6
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.6e-38 161.8 241 39.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.7e-37 160.6 223 40.4
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.9e-37 159.8 259 35.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 8.4e-37 158.3 273 35.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.4e-36 156.8 269 34.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.2e-36 156.0 169 44.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.1e-35 153.7 265 35.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-35 153.3 221 40.3
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 7.8e-35 151.8 274 36.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 7.8e-35 151.8 279 34.8
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-34 151.0 272 37.1
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.3e-34 151.0 247 36.4
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.6e-34 148.7 276 35.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.5e-33 147.5 240 36.2
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-33 147.1 225 39.6
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.5e-33 146.7 260 34.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.3e-33 146.4 259 36.3
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.8e-32 142.5 165 44.2
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 8.1e-32 141.7 271 32.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.4e-31 140.2 258 33.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.9e-30 134.8 160 41.9
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.3e-29 134.4 226 34.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-29 133.3 261 31.0
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 6.4e-29 132.1 263 31.9
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.4e-28 131.0 136 44.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.4e-28 129.0 189 38.6
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 7.1e-28 128.6 160 45.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 9.3e-28 128.3 227 32.6
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.1e-27 127.1 258 32.6
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 4.6e-27 125.9 252 32.1
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 8.7e-26 121.7 193 37.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.9e-25 120.6 129 41.9
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.6e-25 119.0 186 36.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 6.2e-24 115.5 165 38.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.6e-22 108.6 86 54.7
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-21 108.2 99 50.5
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.2e-21 107.1 191 32.5
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.4e-21 105.1 264 32.6
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 3.3e-17 93.2 118 39.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.5e-14 84.3 139 36.0
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.6e-14 82.0 184 33.2
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.9e-13 80.1 75 46.7
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.2e-11 74.7 66 48.5
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.8e-10 70.9 246 23.6
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.7e-08 63.2 126 34.1


User provided reference genes

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