Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-82 310.8 309 100.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.0e-59 233.0 271 79.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.0e-59 233.0 271 79.3
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.3e-51 206.8 271 76.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 6.6e-38 162.2 164 62.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.9e-37 160.6 187 52.9
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.3e-37 159.5 175 53.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 4.7e-36 156.0 184 54.3
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.2e-36 155.6 188 51.6
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.0e-35 154.8 163 54.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.0e-35 154.8 188 52.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.4e-35 154.5 191 52.9
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 4.0e-35 152.9 184 52.2
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 4.0e-35 152.9 184 52.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 4.0e-35 152.9 165 54.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.0e-35 152.9 202 53.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.9e-35 151.8 178 53.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.9e-35 151.8 188 51.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.9e-35 151.8 190 51.1
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 8.9e-35 151.8 190 51.1
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.2e-34 151.4 183 53.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.0e-34 150.6 184 52.7
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.0e-34 150.6 192 66.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.0e-34 150.6 192 66.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.6e-34 150.2 193 49.7
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.6e-34 150.2 190 54.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.4e-34 149.8 167 52.7
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.4e-34 149.4 163 54.6
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.8e-34 149.1 175 53.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.8e-34 149.1 181 51.9
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 7.5e-34 148.7 159 53.5
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 9.8e-34 148.3 197 50.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.8e-34 148.3 160 50.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.3e-33 147.9 191 50.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.3e-33 147.9 179 51.4
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.7e-33 147.5 184 51.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.7e-33 147.5 158 50.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.7e-33 147.5 198 49.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.9e-33 146.7 206 53.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.9e-33 146.7 176 51.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.9e-33 146.7 187 51.9
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.7e-33 146.4 163 55.8
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.7e-33 146.4 190 50.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.7e-33 146.4 210 49.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.7e-33 146.4 174 50.6
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 4.9e-33 146.0 162 51.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.9e-33 146.0 171 49.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.9e-33 146.0 162 50.6
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 4.9e-33 146.0 180 56.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 4.9e-33 146.0 188 50.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.4e-33 145.6 290 45.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.4e-33 145.6 154 53.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 8.3e-33 145.2 188 51.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-32 144.8 175 49.7
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-32 144.8 194 50.0
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-32 144.4 160 51.2
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.4e-32 144.4 160 51.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-32 144.1 172 51.2
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.9e-32 144.1 145 55.9
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.9e-32 144.1 199 53.8
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.9e-32 144.1 199 54.3
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.9e-32 144.1 173 52.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-32 143.3 187 49.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.2e-32 143.3 209 46.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 4.1e-32 142.9 210 47.6
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 4.1e-32 142.9 180 51.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 5.4e-32 142.5 199 47.7
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.4e-32 142.5 199 47.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 5.4e-32 142.5 181 50.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.4e-32 142.5 163 53.4
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 5.4e-32 142.5 216 52.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 5.4e-32 142.5 155 52.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 7.0e-32 142.1 175 50.9
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 9.2e-32 141.7 192 49.0
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 9.2e-32 141.7 283 40.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.2e-31 141.4 160 50.6
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.0e-31 140.6 153 52.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.0e-31 140.6 153 52.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.0e-31 140.6 148 53.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 2.0e-31 140.6 153 52.3
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-31 140.2 185 48.6
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.7e-31 140.2 191 53.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.7e-31 140.2 146 52.7
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.7e-31 140.2 154 51.9
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.7e-31 140.2 155 60.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.5e-31 139.8 145 53.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.6e-31 139.4 180 47.8
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 4.6e-31 139.4 191 48.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.6e-31 139.4 187 48.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.6e-31 139.4 198 48.0
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 6.0e-31 139.0 192 49.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 6.0e-31 139.0 192 49.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.0e-31 139.0 170 50.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.8e-31 138.7 185 48.6
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.8e-31 138.7 185 48.6
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 7.8e-31 138.7 149 59.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.0e-30 138.3 191 46.6
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.7e-30 137.5 198 47.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.0e-30 136.7 188 47.9
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 5.0e-30 136.0 179 49.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.0e-30 136.0 177 48.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 6.6e-30 135.6 147 60.5
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.6e-30 135.2 179 48.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.6e-30 135.2 142 50.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 8.6e-30 135.2 170 50.6
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-29 134.8 148 53.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.1e-29 134.8 173 49.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.1e-29 134.8 196 46.4
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.8 134 53.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-29 134.0 179 48.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-29 134.0 195 47.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.9e-29 134.0 195 47.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.9e-29 134.0 191 53.9
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.5e-29 133.7 166 49.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.5e-29 133.7 188 48.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.3e-29 133.3 186 48.9
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.3e-29 132.9 204 47.1
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.3e-29 132.9 190 45.3
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.3e-29 132.9 178 48.3
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.3e-29 132.9 191 45.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 4.3e-29 132.9 186 65.6
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.3e-29 132.1 178 51.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.3e-29 132.1 178 51.7
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 9.5e-29 131.7 190 48.4
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.2e-28 131.3 151 49.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-28 131.0 151 51.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-28 131.0 151 51.7
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.6e-28 131.0 152 48.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.6e-28 131.0 181 48.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.6e-28 131.0 198 52.5
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.1e-28 130.6 154 53.9
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.1e-28 130.6 134 52.2
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.8e-28 130.2 204 44.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.7e-28 129.4 218 42.2
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 8.1e-28 128.6 155 67.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.3e-27 127.1 173 46.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.0e-27 126.3 283 41.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.0e-27 126.3 283 41.3
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 8.9e-27 125.2 207 44.0
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-26 124.4 174 50.0
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.4e-26 123.2 301 41.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.7e-25 120.9 201 49.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 5.4e-24 115.9 172 44.2
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.1e-23 114.0 156 49.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.0e-22 111.7 164 44.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.2e-20 104.8 152 42.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.8e-20 103.6 160 46.2
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.1e-19 100.1 193 47.7
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 6.8e-19 99.0 56 82.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 5.8e-18 95.9 123 45.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-16 91.7 147 44.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.9e-16 90.9 53 79.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-15 87.4 165 41.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 6.0e-15 85.9 185 39.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 7.8e-15 85.5 57 68.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.0e-14 85.1 123 43.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.3e-14 84.0 48 72.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.4e-11 74.7 40 87.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.7e-09 67.8 40 75.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 6.0e-07 59.3 78 52.6
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.3e-06 58.2 77 51.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.7e-06 57.8 170 34.7


User provided reference genes

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