Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 3727.9 1912 100.0
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 3504.1 1912 94.5
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 3490.3 1937 93.2
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2588.5 1917 69.2
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2421.4 1921 64.3
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2399.8 1921 64.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2378.2 1964 62.8
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2369.7 1925 63.0
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2318.9 1927 62.7
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2313.9 1925 62.4
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2299.6 1927 62.4
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2296.9 1922 61.8
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2258.0 1928 61.4
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2247.2 1924 60.3
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2244.9 1939 60.3
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2236.5 1923 61.3
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2229.5 1906 61.4
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2223.0 1924 60.1
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2209.9 1936 59.5
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2207.9 1923 60.6
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2200.6 1932 59.5
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2198.3 1927 60.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2196.4 1925 59.6
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2175.6 1927 59.4
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2175.2 1927 59.4
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2158.3 1964 58.4
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2157.1 1920 58.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2156.7 1928 59.1
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2151.7 1930 58.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2127.8 1920 58.4
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2120.1 1922 57.5
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2096.2 1925 57.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2092.8 1928 57.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2088.9 1929 57.1
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2080.8 1944 56.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2071.2 1972 56.0
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2070.8 1926 56.9
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2070.4 1926 56.9
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2070.0 1919 57.2
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2060.4 1927 57.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2056.6 1928 57.1
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2053.9 1941 56.2
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2053.1 1930 57.0
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2045.8 2099 54.1
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2028.4 1949 56.0
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2021.9 1929 56.1
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2021.9 2043 53.9
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1986.8 1944 54.3
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1979.1 2420 47.3
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1954.9 1926 53.7
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1951.0 1920 54.5
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1942.5 1927 53.6
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1927.5 1933 55.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1919.4 1923 53.2
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1916.0 1801 56.5
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1908.6 1921 53.5
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1895.2 1920 52.4
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1882.5 1865 53.8
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1880.9 1935 53.4
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1877.1 1938 52.3
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1876.3 1932 53.2
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1875.1 1937 52.4
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1874.8 1924 52.5
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1855.1 1918 52.0
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1854.7 1949 51.6
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1840.5 1920 51.5
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1837.4 1922 51.2
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1831.6 1921 51.1
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1829.3 1928 50.9
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1828.9 1926 51.3
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1828.5 1923 51.4
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1819.3 1933 52.2
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1817.7 1920 51.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1812.3 1919 51.4
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1808.9 1942 50.6
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1805.0 1922 51.0
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1796.9 1919 50.9
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1796.6 1939 50.5
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1795.4 1935 50.6
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1795.0 1919 50.8
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1793.9 1974 49.9
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1789.6 1839 52.9
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1786.2 1932 50.5
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1785.8 1932 50.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1785.4 1920 50.7
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1773.4 1930 51.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1758.4 1874 51.9
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1751.1 1831 51.9
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1725.7 1936 50.1
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1704.9 1975 47.9
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1697.2 1869 49.8
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1672.9 1914 48.6
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1617.8 1329 62.6
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1575.8 1964 44.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1541.2 1708 49.4
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1505.0 1563 52.5
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1496.1 1220 63.2
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1416.4 1960 41.6
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1404.0 1978 41.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1325.5 1960 40.2
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1214.1 889 68.8
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1159.4 1106 53.3
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.7e-301 1040.4 2080 33.5
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.7e-299 1033.1 1145 50.2
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.7e-293 1013.8 2050 33.5
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 7.9e-291 1005.0 1694 37.5
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.7e-264 917.5 1105 45.8
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.0e-262 910.6 2005 32.2
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 2.0e-249 867.5 1939 31.9
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.6e-217 760.8 782 54.2
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 4.3e-180 637.1 904 39.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 9.1e-138 496.5 706 42.1
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.2e-74 285.0 258 56.2
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 3.2e-66 258.8 177 78.0
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 2.5e-63 249.2 173 74.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.3e-62 246.9 565 31.7
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 3.1e-53 215.7 221 56.6
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.1e-50 207.2 221 44.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.8e-46 192.6 206 46.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 8.2e-46 191.0 166 56.0
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.5e-44 186.8 141 71.6
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-42 180.3 645 26.5
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.5e-34 151.8 361 30.2
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.6e-33 150.2 103 68.9
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.2e-28 134.0 214 33.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.8e-27 129.0 197 39.1
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 5.5e-26 125.2 187 37.4
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 2.7e-25 122.9 127 55.9
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.8e-24 120.2 107 62.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.3e-24 119.8 95 61.1
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 2.4e-21 109.8 82 64.6
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.2e-17 97.4 126 39.7
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.6e-17 97.1 103 54.4
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.6e-12 80.5 107 39.3
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.2e-11 76.6 107 39.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 1.9e-10 73.6 87 46.0


User provided reference genes

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