Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 3721.8 1888 100.0
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 3305.4 2012 85.0
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 3248.4 1882 87.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2927.1 1890 78.6
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2884.0 1884 77.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2864.3 1884 76.9
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2854.3 1887 76.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2806.2 1934 74.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2787.3 1885 75.2
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2777.7 1886 75.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2767.6 1887 75.0
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2234.9 1916 60.4
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2217.2 1915 60.3
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2204.5 1962 58.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2176.7 1919 58.8
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2166.0 1921 59.3
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2157.9 1911 58.5
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2151.7 1915 58.9
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2142.5 1920 58.4
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2133.6 1918 58.1
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2120.5 1919 57.3
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2118.2 1914 57.3
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2114.7 1914 57.2
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2105.9 1920 57.3
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2097.8 1951 56.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2088.5 1924 55.9
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2070.4 1934 55.7
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2070.0 1918 55.9
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2068.9 1919 56.2
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2066.6 1920 56.9
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2062.7 1919 57.2
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2062.3 1933 55.3
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2049.6 1918 55.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2034.6 1901 56.3
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2028.4 1919 56.8
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2014.6 1944 56.1
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1974.5 1918 55.0
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1964.1 1919 53.9
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1957.6 2094 51.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1949.9 1920 53.7
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1943.7 1918 53.3
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1932.5 1917 53.5
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1929.1 1910 53.9
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1928.3 1899 53.8
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1926.8 1943 53.5
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1923.7 2413 45.5
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1915.2 1915 52.8
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1903.3 1906 52.5
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1895.6 1943 53.0
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1888.2 1908 51.8
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1872.1 1941 52.7
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1871.3 1914 52.4
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1847.4 1935 51.7
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1847.4 1907 51.5
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1836.6 1912 51.4
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1834.7 1905 51.3
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1824.3 1916 51.6
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1822.4 1908 51.8
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1811.6 1928 50.8
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1810.4 1916 50.3
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1901 51.2
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1802.7 1902 50.7
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1802.7 1909 50.7
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1795.8 1925 50.2
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1795.0 1853 51.6
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1789.2 1788 52.2
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1784.2 1901 50.7
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1784.2 1928 50.4
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1780.4 1899 50.2
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1780.4 1907 50.3
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1776.5 1902 50.7
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1775.0 1938 49.4
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1774.6 1902 50.6
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1773.8 1921 50.7
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1771.1 1922 50.3
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1768.1 1923 50.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1766.1 1915 50.4
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1762.7 1902 50.4
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1758.8 1905 49.6
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1746.5 1919 50.7
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1737.6 1954 48.0
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1732.6 1917 48.5
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1730.3 1913 48.9
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1720.3 1910 49.1
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1719.1 1861 50.0
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1696.4 1817 50.6
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1677.5 1914 48.2
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1662.9 1819 49.1
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1655.2 1904 48.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1627.8 1922 47.9
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1611.3 1968 45.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1600.5 1864 47.2
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1536.5 1951 43.7
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1493.0 1696 47.8
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1442.6 1323 56.2
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1392.5 1959 41.3
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1379.0 1952 40.3
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1354.3 1571 47.7
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1324.7 1206 56.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1278.1 1948 39.5
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1100.5 2065 34.6
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1097.0 1098 52.6
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1083.9 887 62.9
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.1e-304 1050.0 2054 35.2
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.2e-296 1024.2 1139 49.5
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 3.7e-293 1012.7 1986 34.6
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.0e-274 951.4 1895 33.5
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 4.0e-271 939.5 1686 35.6
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 3.1e-255 886.7 1103 44.4
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 3.8e-221 773.5 778 53.3
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.0e-201 708.0 911 42.5
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 5.3e-138 497.3 702 41.7
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 9.1e-82 310.5 261 57.5
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 7.3e-71 274.2 172 82.0
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 4.0e-69 268.5 176 79.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 2.5e-63 249.2 572 29.7
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-55 220.7 637 28.3
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 6.8e-53 214.5 218 45.0
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 3.2e-50 205.7 276 47.5
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 8.6e-48 197.6 206 45.6
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.9e-47 196.4 184 57.1
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.2e-46 193.7 140 72.9
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 4.7e-46 191.8 387 31.3
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 4.6e-41 175.3 164 53.0
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.1e-37 164.1 102 77.5
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 4.4e-36 158.7 97 83.5
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 4.5e-28 132.1 209 32.5
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.5e-23 117.1 83 68.7
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.9e-23 116.7 124 54.0
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.4e-21 110.5 113 58.4
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.0e-20 106.7 106 57.5
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 9.9e-20 104.4 96 56.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.5e-17 95.9 191 31.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 2.5e-15 89.7 127 37.0
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 3.1e-13 82.8 73 52.1
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.6e-12 79.7 73 50.7


User provided reference genes

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