Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.9e-115 417.5 281 100.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.4e-108 396.7 280 96.1
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 7.2e-92 341.3 282 85.1
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.6e-91 340.1 280 88.6
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-88 329.7 283 83.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-88 329.7 283 83.7
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 6.3e-88 328.2 282 80.9
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-84 317.4 189 88.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.5e-84 316.2 281 84.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.2e-83 313.9 230 77.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.0e-82 308.9 177 91.5
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 8.8e-82 307.8 280 78.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.8e-80 302.8 228 78.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 5.3e-79 298.5 290 72.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-77 294.3 283 74.2
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.8e-77 292.4 190 82.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.1e-75 286.6 196 81.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.1e-75 286.6 296 70.3
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 6.1e-75 285.0 172 89.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-74 283.9 292 67.1
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.3e-74 283.1 228 73.7
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.5e-73 280.4 285 69.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.5e-73 280.4 291 66.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.4e-73 278.9 235 69.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.4e-73 278.9 222 81.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.4e-73 278.9 280 80.0
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.3e-72 277.3 191 79.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.3e-72 277.3 291 66.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.3e-72 277.3 301 70.1
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.7e-72 276.9 228 68.9
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.8e-72 275.4 281 78.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 8.3e-72 274.6 226 73.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.3e-72 274.6 285 68.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.4e-71 273.1 283 73.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.1e-71 272.7 168 85.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.0e-71 271.6 165 86.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 7.0e-71 271.6 283 67.5
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.6e-70 270.4 186 79.0
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 3.5e-70 269.2 187 80.2
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 4.5e-70 268.9 234 70.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 5.9e-70 268.5 230 72.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.7e-70 268.1 188 79.3
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.7e-70 268.1 188 79.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-69 267.7 234 70.5
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.7e-69 266.9 165 86.1
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.9e-69 266.2 172 80.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.0e-69 265.4 230 67.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.0e-69 265.4 185 80.0
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.5e-69 265.0 222 73.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 6.5e-69 265.0 162 84.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 6.5e-69 265.0 186 80.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.5e-68 263.8 165 84.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 220 70.5
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-68 263.5 220 70.5
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.9e-68 263.5 220 70.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.9e-68 263.5 176 79.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 223 72.6
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.9e-68 263.5 286 67.5
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.5e-68 263.1 187 77.0
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.2e-68 262.7 284 70.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.2e-68 262.3 176 79.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 7.2e-68 261.5 220 70.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 7.2e-68 261.5 237 66.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 7.2e-68 261.5 156 87.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 9.5e-68 261.2 187 77.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 9.5e-68 261.2 173 81.5
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 225 67.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-67 260.8 225 67.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 286 71.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.6e-67 260.4 156 87.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.8e-67 259.6 156 87.2
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 167 80.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.6e-67 259.2 185 75.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 4.7e-67 258.8 299 60.2
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.7e-67 258.8 180 78.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.1e-67 258.5 165 83.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.1e-67 258.5 172 78.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 8.0e-67 258.1 230 66.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 8.0e-67 258.1 171 81.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 86.9
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 202 74.3
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-66 257.3 152 88.2
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 86.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.8e-66 256.9 230 65.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.3e-66 256.5 177 79.1
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.0e-66 256.1 219 78.1
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 4.0e-66 255.8 222 70.7
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 4.0e-66 255.8 222 70.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 4.0e-66 255.8 227 72.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.2e-66 255.4 184 78.3
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 5.2e-66 255.4 286 71.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.2e-66 255.4 175 80.0
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 5.2e-66 255.4 163 80.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.8e-66 255.0 184 77.7
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.8e-66 255.0 163 80.4
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 8.9e-66 254.6 179 75.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.2e-65 254.2 192 74.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.5e-65 253.8 216 71.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.0e-65 253.4 219 67.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.0e-65 253.4 282 73.0
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 4.4e-65 252.3 173 76.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 186 75.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.2e-64 250.0 225 71.1
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.8e-64 249.6 188 74.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.7e-64 249.2 147 87.8
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.3e-64 248.1 177 76.3
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.1e-63 247.7 199 70.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-63 246.9 242 63.2
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.1e-63 246.1 151 83.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 4.1e-63 245.7 201 70.1
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.4e-63 245.4 161 80.7
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 5.4e-63 245.4 161 80.7
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 7.0e-63 245.0 242 63.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.0e-63 245.0 242 63.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 168 77.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-61 240.7 173 75.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.0e-61 238.8 153 81.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.0e-61 238.8 153 81.0
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.5e-60 237.3 180 73.3
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-60 236.9 165 77.6
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.5e-60 236.5 153 79.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 9.5e-60 234.6 153 81.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.7e-59 232.3 194 70.1
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.0e-59 231.5 157 78.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.0e-57 226.9 146 80.8
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.4e-57 226.1 156 77.6
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.4e-57 226.1 230 64.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 5.7e-57 225.3 170 75.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.2e-56 223.4 144 81.2
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.9e-56 222.2 219 68.9
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 7.0e-55 218.4 163 75.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 7.0e-55 218.4 291 63.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.6e-54 217.2 195 66.7
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.0e-54 216.9 188 67.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.0e-54 216.9 188 67.0
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.9e-53 212.6 138 80.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.4e-50 204.1 186 64.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.2e-49 201.1 197 59.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 4.4e-49 199.1 196 61.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.7e-48 196.1 122 83.6
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.3e-48 194.9 189 61.4
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.6e-46 189.1 173 65.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 6.0e-46 188.7 153 69.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-45 186.8 278 60.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.5e-44 183.3 160 61.2
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.1e-43 178.3 192 58.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.8e-42 177.2 153 64.1
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.4e-41 172.9 192 56.8
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 4.4e-41 172.6 126 73.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-36 157.9 263 57.8
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.1e-35 153.7 94 81.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-33 147.5 188 51.1
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 5.8e-33 145.6 111 70.3
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.8e-33 145.6 192 51.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.8e-33 145.6 192 51.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 7.1e-31 138.7 177 50.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.8e-26 124.0 140 52.1
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.1e-19 98.6 190 41.6
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 8.4e-16 88.6 201 35.8
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 5.4e-15 85.9 138 46.4
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.6e-14 82.8 113 46.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.6e-12 75.1 42 83.3
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.4e-07 61.2 123 41.5


User provided reference genes

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