Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.1e-218 761.5 391 100.0
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-216 755.4 391 99.2
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 9.5e-167 590.5 379 78.6
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-166 590.1 379 78.6
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 5.4e-146 521.5 357 75.6
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 5.4e-146 521.5 382 71.5
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.0e-144 515.8 383 68.1
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 3.6e-142 508.8 383 68.7
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 8.1e-142 507.7 382 68.6
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 8.1e-142 507.7 387 68.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 3.1e-141 505.8 383 68.1
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 5.2e-141 505.0 382 67.5
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.2e-141 505.0 377 68.7
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.2e-141 505.0 383 68.7
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.9e-141 504.2 383 68.4
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.2e-140 503.8 382 67.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.6e-140 502.7 383 67.6
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.6e-140 502.7 383 66.6
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.6e-140 502.7 383 66.8
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 3.4e-140 502.3 388 67.8
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 7.6e-140 501.1 382 68.1
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 9.9e-140 500.7 386 66.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.3e-139 500.4 382 66.8
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.7e-139 500.0 390 67.2
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.9e-139 499.2 389 66.6
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 3.7e-139 498.8 382 67.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.7e-139 498.8 382 66.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 3.7e-139 498.8 385 68.1
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 3.7e-139 498.8 384 66.7
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 4.9e-139 498.4 383 66.3
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 4.9e-139 498.4 382 67.5
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 4.9e-139 498.4 382 66.5
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.4e-138 496.9 383 66.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.4e-138 496.9 387 66.9
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.9e-138 496.5 386 65.5
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.2e-138 495.7 382 65.4
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.2e-138 495.7 386 65.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.2e-138 495.7 385 67.5
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 4.1e-138 495.4 386 64.8
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 4.1e-138 495.4 382 66.0
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 7.1e-138 494.6 382 66.8
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 9.2e-138 494.2 388 66.8
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 9.2e-138 494.2 390 66.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 9.2e-138 494.2 384 65.6
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.6e-137 493.4 390 66.2
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.6e-137 493.4 384 66.7
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.1e-137 493.0 382 66.8
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.7e-137 492.7 383 68.4
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.5e-137 492.3 378 68.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 4.6e-137 491.9 382 64.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.6e-137 491.9 382 64.9
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 4.6e-137 491.9 393 64.9
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 6.0e-137 491.5 382 66.5
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 6.0e-137 491.5 393 64.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.7e-136 490.0 382 66.8
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 2.3e-136 489.6 382 67.3
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.0e-136 489.2 383 66.8
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.0e-136 489.2 384 67.4
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 5.1e-136 488.4 382 63.9
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 5.1e-136 488.4 382 63.9
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 6.6e-136 488.0 382 64.1
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 6.6e-136 488.0 382 64.1
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.1e-135 487.3 382 64.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.9e-135 486.5 399 63.2
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 9.6e-135 484.2 382 65.4
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 6.2e-134 481.5 383 65.5
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.8e-133 479.9 382 63.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.8e-133 479.9 382 65.4
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.1e-133 479.2 385 64.4
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 8.9e-133 477.6 410 62.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 8.9e-133 477.6 388 64.4
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 7.6e-132 474.6 393 63.9
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.7e-131 473.4 413 62.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.8e-131 472.2 382 63.4
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 4.9e-131 471.9 382 64.9
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.9e-131 471.9 382 64.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.4e-130 469.5 387 64.1
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 9.3e-130 467.6 382 63.9
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.1e-129 466.5 403 61.8
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 6.0e-129 464.9 385 64.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.6e-128 461.5 374 62.6
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 5.6e-127 458.4 383 62.7
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 7.3e-127 458.0 382 62.8
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 1.6e-126 456.8 410 60.2
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.1e-126 456.4 384 62.0
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.1e-125 454.1 369 63.1
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.1e-125 454.1 382 62.0
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.4e-125 453.0 384 60.7
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 4.0e-125 452.2 383 61.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 9.0e-125 451.1 384 60.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.2e-124 450.7 383 62.1
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.2e-124 450.7 383 61.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.0e-124 449.9 383 60.3
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 5.8e-124 448.4 383 60.3
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 5.8e-124 448.4 383 61.1
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 6.4e-123 444.9 383 60.3
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 8.4e-123 444.5 383 60.6
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.4e-122 443.7 384 60.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 4.2e-122 442.2 383 59.8
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 6.0e-121 438.3 383 60.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 7.9e-121 438.0 383 59.5
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.0e-120 437.6 383 59.8
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.3e-120 437.2 383 59.8
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-119 434.1 336 67.9
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.1e-118 429.9 381 58.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.4e-117 427.2 383 58.7
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.6e-116 422.9 386 59.8
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 5.8e-116 421.8 330 68.2
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.2e-114 416.0 391 56.5
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.0e-112 411.0 389 54.2
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.1e-110 403.3 383 55.4
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 7.6e-108 394.8 383 54.3
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.8e-107 392.5 376 58.8
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 4.9e-107 392.1 369 59.9
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.9e-107 392.1 336 62.5
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.7e-104 381.3 336 61.3
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 9.6e-103 377.9 289 69.2
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.8e-99 365.9 381 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.0e-96 357.8 380 50.8
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.0e-96 357.8 390 53.6
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.3e-93 345.5 294 61.2
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.1e-89 333.6 326 54.9
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 6.7e-88 328.6 314 57.0
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-81 307.8 328 57.3
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.7e-76 288.5 205 73.7
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 6.7e-72 275.4 258 60.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.0e-64 249.6 166 75.9
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.2e-63 248.1 161 75.8
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 6.3e-62 242.3 387 38.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.4e-61 240.4 251 50.6
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.1e-58 231.5 226 54.4
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-50 204.9 159 69.2
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 6.1e-49 199.1 329 35.6
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.3e-46 191.4 174 53.4
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.7e-46 189.9 167 61.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-43 181.4 167 59.3
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 7.3e-42 175.6 228 41.7
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 4.3e-34 149.8 169 47.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-31 141.7 192 44.8
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 3.7e-30 136.7 133 58.6
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 8.3e-30 135.6 133 57.9
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.3e-27 127.5 120 56.7
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.2e-25 121.7 81 75.3
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.6e-25 121.3 84 63.1
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.6e-20 104.8 134 43.3
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.9e-19 100.1 80 61.2
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 6.4e-14 82.8 50 74.0
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 6.4e-14 82.8 50 74.0
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.4e-13 80.9 68 57.4


User provided reference genes

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