Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.3e-236 822.8 444 100.0
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 9.5e-123 444.5 367 75.5
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 9.4e-46 188.7 543 33.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 9.8e-43 178.7 388 36.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-42 177.6 229 55.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 4.5e-40 169.9 551 31.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.2e-39 167.5 214 54.2
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.6e-37 160.2 221 53.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.7e-37 159.8 215 54.4
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 8.0e-37 159.1 214 52.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.4e-36 158.3 225 48.0
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.4e-36 158.3 211 51.7
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.8e-36 157.9 232 49.1
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.8e-36 157.9 214 51.4
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.8e-36 157.9 214 51.4
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.8e-36 156.0 213 53.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.6e-35 154.1 227 52.4
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.7e-34 151.4 212 51.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.2e-34 151.0 224 50.0
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.2e-34 151.0 212 49.5
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.9e-34 149.8 209 52.6
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 6.3e-34 149.4 223 48.4
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 3.1e-33 147.1 226 47.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 7.7e-32 142.5 212 49.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.3e-31 141.7 212 50.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.7e-31 141.4 220 48.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.1e-30 138.7 212 50.9
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.9e-30 137.9 213 49.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.6e-30 136.3 214 47.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.2e-30 136.0 219 48.4
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.1e-29 134.4 223 45.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 2.1e-29 134.4 213 46.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.1e-29 134.4 209 47.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 3.6e-29 133.7 225 47.1
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.0e-28 132.1 223 47.1
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.4e-28 131.7 211 46.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-28 130.6 213 47.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.0e-28 130.6 228 44.7
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.9e-28 129.0 209 45.0
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.5e-27 128.3 176 52.3
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.6e-27 127.5 224 43.8
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.4e-27 127.1 214 45.3
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.4e-27 127.1 216 47.7
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.4e-27 127.1 237 48.1
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.4e-27 127.1 237 48.1
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.7e-27 126.3 213 45.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.8e-27 125.6 214 45.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.3e-26 125.2 201 48.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.2e-26 124.4 223 45.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.9e-26 124.0 220 45.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.7e-26 123.6 213 45.5
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 6.4e-26 122.9 218 45.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.1e-25 122.1 210 43.3
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.8e-25 121.3 216 43.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.2e-25 120.6 210 46.2
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 7.0e-25 119.4 224 43.3
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 9.2e-25 119.0 200 49.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.2e-24 118.6 509 28.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.2e-24 118.6 211 46.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.2e-24 118.6 211 43.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.7e-24 117.5 211 43.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.7e-24 117.5 223 45.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 3.5e-24 117.1 213 47.9
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.5e-24 117.1 213 43.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 4.6e-24 116.7 223 41.7
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 4.6e-24 116.7 218 46.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.6e-24 116.7 213 43.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 7.8e-24 115.9 213 43.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 7.8e-24 115.9 212 44.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.9e-23 114.0 215 45.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.6e-23 112.5 212 42.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.1e-22 112.1 211 46.4
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.5e-22 110.9 214 42.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.6e-22 109.8 222 41.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 5.6e-22 109.8 215 41.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 9.5e-22 109.0 178 46.1
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 9.5e-22 109.0 209 44.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-21 108.6 546 28.4
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.6e-21 108.2 210 43.8
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.1e-21 107.8 211 43.6
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.8e-21 107.5 213 43.7
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.8e-21 107.5 224 41.1
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.8e-21 107.5 189 48.1
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.6e-21 107.1 221 44.8
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 6.2e-21 106.3 485 28.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-20 105.5 219 39.7
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.8e-20 104.8 198 43.4
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.2e-20 103.2 222 41.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 6.8e-20 102.8 214 42.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 6.8e-20 102.8 219 40.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-19 101.7 223 39.0
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.6e-19 100.9 222 40.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.4e-19 100.1 212 41.5
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.4e-19 100.1 58 74.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 5.8e-19 99.8 210 42.4
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 7.5e-19 99.4 211 40.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.3e-18 98.6 58 74.1
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.2e-18 97.8 215 41.9
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.9e-18 97.4 542 26.2
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.9e-18 96.7 503 26.6
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.9e-18 96.7 233 38.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-17 95.1 216 39.8
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.4e-17 94.4 217 40.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.2e-17 94.0 526 26.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.1e-17 93.6 219 40.2
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.1e-17 93.6 213 40.8
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.4e-17 93.2 58 69.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.4e-17 93.2 237 35.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 9.2e-17 92.4 219 39.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 9.2e-17 92.4 219 39.7
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.6e-16 91.7 58 69.0
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.0e-16 89.7 137 50.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 6.0e-16 89.7 58 65.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.8e-16 89.4 212 40.6
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 7.8e-16 89.4 131 46.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.0e-15 89.0 55 69.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.7e-15 88.2 211 39.8
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.7e-15 88.2 58 67.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.7e-15 88.2 240 35.0
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.9e-15 87.0 57 64.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.0e-15 86.7 58 65.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 62.1
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.6e-15 86.3 58 65.5
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.6e-15 85.9 146 39.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.1e-14 85.5 55 69.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.3e-14 84.0 521 26.3
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.3e-14 84.0 57 64.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.6e-14 83.2 76 60.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.1e-13 81.3 223 36.3
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.8e-13 80.9 525 24.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.6e-13 80.5 58 62.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 4.7e-13 80.1 213 33.8
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 6.2e-13 79.7 54 61.1
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-12 78.6 507 25.6
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-12 77.0 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.8e-12 76.3 210 34.3
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.0e-11 74.7 507 26.2
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.6e-11 74.3 58 58.6
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-11 73.9 499 25.9
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.8e-11 72.4 499 25.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.8e-11 72.4 217 33.2
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.7e-10 70.5 507 25.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-09 68.6 81 50.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 7.1e-09 66.2 69 52.2
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 7.1e-09 66.2 69 52.2
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.1e-09 66.2 97 42.3
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-08 65.5 105 41.0
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-08 65.1 58 50.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.1e-08 64.7 55 54.5
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.7e-08 64.3 65 50.8
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 6.0e-08 63.2 480 26.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.7e-07 61.6 477 25.4
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.3e-07 61.2 77 46.8
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.3e-07 61.2 213 30.0
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 3.9e-07 60.5 119 32.8
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.9e-07 60.5 520 24.8
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 8.6e-07 59.3 75 45.3


User provided reference genes

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