Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-138 496.1 243 100.0
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-138 496.1 243 100.0
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.8e-122 440.3 241 88.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.2e-121 439.1 241 88.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 8.3e-121 437.2 241 87.6
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.0e-120 434.1 242 87.2
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.1e-118 427.9 236 89.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.3e-117 424.1 242 85.5
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.0e-114 416.0 236 88.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.1e-112 408.3 242 83.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.3e-94 349.4 236 70.8
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.1e-94 348.2 217 77.4
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.1e-92 342.8 236 69.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.8e-91 339.7 242 71.9
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.3e-91 338.2 236 69.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.2e-90 337.0 236 69.1
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 7.6e-90 334.3 237 67.9
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.3e-89 333.6 236 67.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 2.2e-89 332.8 236 66.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.9e-89 331.6 235 68.1
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.4e-88 329.3 235 65.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 7.1e-88 327.8 237 67.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.6e-87 326.6 236 66.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-87 325.9 237 66.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.5e-87 325.5 235 64.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.0e-87 324.7 236 65.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 6.0e-87 324.7 238 66.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.9e-87 324.3 237 65.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 7.9e-87 324.3 237 64.6
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.1e-86 321.6 236 65.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 5.1e-86 321.6 236 65.3
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.5e-85 320.1 235 65.1
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.5e-85 319.3 239 66.1
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-84 315.1 251 61.4
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.4e-83 313.5 236 63.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.8e-83 313.2 236 64.4
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.1e-83 312.4 237 66.2
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-83 312.4 237 62.9
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.0e-83 312.0 236 63.6
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.2e-82 310.5 235 62.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.6e-82 309.3 236 64.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.3e-81 307.0 236 63.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.9e-81 305.8 239 62.3
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-81 305.8 236 63.1
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.8e-81 305.4 239 61.9
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 6.4e-81 304.7 240 60.8
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.4e-80 303.5 236 62.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.1e-79 299.7 236 61.0
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.9e-79 297.7 164 86.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.3e-78 297.0 239 59.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.8e-78 296.6 236 60.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.7e-78 294.7 237 59.9
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.3e-77 292.4 236 59.3
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 9.6e-77 290.8 234 61.5
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.7e-76 288.9 251 58.2
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 3.7e-76 288.9 240 59.2
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.1e-75 287.3 237 59.5
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.8e-75 286.6 235 60.4
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.4e-75 286.2 235 59.6
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.4e-75 286.2 249 57.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.1e-75 285.8 237 60.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 6.9e-75 284.6 237 58.2
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 9.0e-75 284.3 236 58.9
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 9.0e-75 284.3 237 60.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.0e-74 283.1 236 57.6
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-74 283.1 242 60.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 236 58.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.4e-74 282.3 240 55.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.5e-74 282.0 236 58.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 4.5e-74 282.0 234 56.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.0e-73 280.8 235 58.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.7e-73 280.0 242 59.9
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.9e-73 278.5 246 58.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.9e-73 278.5 246 58.9
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.9e-73 278.5 245 58.4
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 4.9e-73 278.5 240 59.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.5e-73 278.1 235 57.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.5e-73 278.1 235 57.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.5e-73 278.1 163 82.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.5e-73 278.1 239 58.2
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.5e-73 278.1 236 57.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.4e-73 277.7 235 57.0
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 8.4e-73 277.7 225 62.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-72 277.3 207 63.8
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-72 276.9 251 56.6
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.2e-72 275.8 238 58.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 5.5e-72 275.0 245 58.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 5.5e-72 275.0 241 58.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.1e-72 274.6 235 57.4
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 9.3e-72 274.2 236 56.4
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.6e-71 273.5 245 57.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.1e-71 273.1 247 57.5
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.6e-71 271.9 246 59.3
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 4.6e-71 271.9 246 58.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.3e-70 270.4 201 64.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.8e-70 270.0 235 56.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.3e-70 269.6 244 58.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-70 269.2 207 61.8
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.9e-70 268.9 238 52.9
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.9e-70 268.9 236 54.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.9e-70 268.9 236 54.7
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-70 268.9 235 56.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.1e-70 268.5 236 57.2
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 6.7e-70 268.1 236 54.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.7e-70 268.1 234 57.3
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 6.7e-70 268.1 234 58.5
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.5e-69 266.9 236 54.2
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.5e-69 266.9 235 55.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.3e-69 265.4 237 57.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 5.7e-69 265.0 234 58.1
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.2e-68 263.1 239 53.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.2e-68 263.1 217 59.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.8e-68 262.7 251 57.0
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.1e-67 260.8 239 54.8
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-67 260.4 237 56.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.4e-67 259.6 242 54.5
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.4e-67 259.6 242 54.5
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.1e-67 259.2 237 55.3
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 6.9e-67 258.1 238 55.0
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-67 258.1 236 53.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 6.9e-67 258.1 238 55.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 9.0e-67 257.7 240 53.8
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.5e-66 256.9 236 55.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-66 256.9 245 55.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.6e-66 256.1 241 55.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.6e-66 256.1 241 55.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.6e-66 256.1 237 55.3
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 3.4e-66 255.8 241 54.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.9e-66 255.0 237 54.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 5.9e-66 255.0 229 54.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.8e-65 252.3 237 54.4
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 8.5e-65 251.1 237 54.9
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 8.5e-65 251.1 237 54.9
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.9e-64 250.0 234 51.7
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.9e-64 250.0 243 53.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.2e-64 248.8 237 52.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 9.4e-64 247.7 237 53.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.2e-63 247.3 236 50.4
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.7e-62 241.5 231 50.6
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 8.8e-62 241.1 217 54.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.1e-61 240.7 258 50.0
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 7.4e-61 238.0 237 54.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.7e-60 236.9 241 51.5
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 3.4e-58 229.2 245 48.2
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 5.9e-58 228.4 238 49.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.9e-57 226.1 244 48.8
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.5e-56 223.0 208 54.8
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.5e-56 221.9 234 49.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.6e-55 219.2 230 50.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.9e-55 218.0 184 58.2
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.5e-53 213.8 237 48.9
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.3e-53 212.6 224 49.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 6.3e-52 208.4 185 58.9
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.2e-52 208.0 200 56.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.1e-51 207.6 162 61.7
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-51 206.1 251 46.6
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.5e-50 203.8 259 41.7
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 7.7e-50 201.4 248 46.0
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.6e-45 186.4 163 55.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 9.7e-45 184.5 157 57.3
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 9.1e-43 177.9 262 38.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 4.5e-42 175.6 127 66.9
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.3e-38 163.3 191 46.1
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 2.0e-37 160.2 208 42.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.8e-36 156.4 118 66.9
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.7e-31 139.8 117 60.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.6e-31 139.4 92 69.6
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.4e-29 132.9 120 55.8
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-27 127.5 107 59.8
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-25 118.2 93 61.3
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 4.2e-24 115.9 128 47.7
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 9.5e-24 114.8 169 35.5
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.8e-22 110.5 88 54.5
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.8e-22 110.5 145 42.1
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 7.5e-21 105.1 191 32.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.7e-20 104.0 74 66.2
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.3e-17 93.6 98 49.0
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.3e-17 93.6 143 39.2
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 7.3e-16 88.6 89 50.6
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.2e-14 82.4 80 50.0
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-13 80.5 55 69.1
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.4e-13 79.7 90 38.9
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 3.5e-10 69.7 210 27.1


User provided reference genes

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