Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 6.0e-203 710.7 373 100.0
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-189 666.0 373 93.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 4.9e-189 664.5 373 92.2
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.6e-187 657.9 373 93.3
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.3e-186 656.4 373 92.0
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 3.0e-186 655.2 373 92.8
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.3e-185 651.7 373 91.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 9.3e-164 580.5 373 78.3
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.8e-162 576.2 373 77.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.1e-161 573.5 373 76.4
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.5e-161 573.2 373 76.1
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 8.2e-160 567.4 373 75.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.7e-157 559.7 373 75.6
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.4e-156 556.6 373 75.1
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.4e-156 556.6 375 74.9
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.9e-156 556.2 373 74.8
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.2e-156 555.4 374 74.6
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 5.5e-156 554.7 373 75.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.6e-155 552.0 373 75.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 6.1e-155 551.2 374 73.3
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 6.1e-155 551.2 373 74.0
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.8e-154 549.7 385 73.8
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.3e-154 549.3 383 73.4
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 3.0e-154 548.9 380 72.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 3.9e-154 548.5 373 74.5
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 8.8e-154 547.4 380 72.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.1e-153 547.0 385 73.5
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 3.3e-153 545.4 385 71.9
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.4e-153 545.0 373 73.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 4.4e-153 545.0 384 73.4
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 5.7e-153 544.7 386 73.6
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.8e-152 542.3 373 72.7
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.1e-151 540.4 379 72.8
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-151 540.0 379 71.8
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.4e-151 540.0 379 71.8
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.4e-151 539.3 373 73.2
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 2.4e-151 539.3 379 71.5
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.4e-151 539.3 374 73.8
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 9.1e-151 537.3 379 71.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.5e-150 536.6 379 70.7
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-150 536.6 379 70.7
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.0e-150 536.2 379 70.7
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.0e-150 536.2 379 70.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.0e-150 536.2 385 71.2
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 3.4e-150 535.4 387 69.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.3e-149 533.5 379 71.2
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 2.2e-149 532.7 374 72.2
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.9e-149 532.3 385 71.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 5.0e-149 531.6 385 69.6
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.0e-149 531.6 379 70.4
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.4e-148 530.0 387 68.7
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.9e-148 529.6 385 68.3
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.2e-148 528.9 379 70.4
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 4.2e-148 528.5 385 68.3
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 9.4e-148 527.3 376 72.1
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.7e-147 525.0 376 70.2
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 6.1e-147 524.6 374 71.1
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 7.9e-147 524.2 373 71.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.4e-146 523.5 375 69.9
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.3e-146 522.7 375 70.9
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.0e-146 522.3 374 70.6
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 3.9e-146 521.9 375 70.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 3.9e-146 521.9 394 67.3
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 8.8e-146 520.8 401 70.3
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.5e-145 520.0 373 70.0
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 3.3e-145 518.8 380 68.7
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 7.4e-145 517.7 377 71.4
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.7e-144 515.4 360 72.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 1.1e-143 513.8 391 67.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 7.0e-143 511.1 394 66.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.6e-142 510.0 381 68.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-142 510.0 383 68.7
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.5e-142 508.8 383 68.1
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.0e-141 507.3 384 66.4
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.5e-141 504.2 373 69.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.1e-140 503.8 377 67.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 3.2e-140 502.3 381 67.2
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 4.2e-140 501.9 375 67.7
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 4.2e-140 501.9 374 68.7
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 7.2e-140 501.1 375 67.5
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.2e-139 500.4 376 68.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.7e-139 499.2 374 67.1
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 6.1e-139 498.0 374 69.0
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.0e-138 497.3 388 65.5
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.2e-138 495.0 391 65.5
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.2e-137 493.8 374 67.1
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.0e-137 493.0 367 67.6
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 5.7e-137 491.5 374 67.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 2.2e-136 489.6 377 66.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 3.7e-136 488.8 375 66.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.1e-135 487.3 374 67.4
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.4e-135 486.9 374 66.0
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 3.1e-135 485.7 372 64.8
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.3e-135 485.0 372 65.1
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 9.1e-135 484.2 377 66.3
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.6e-134 483.4 374 69.3
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 2.7e-134 482.6 374 66.8
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 3.5e-134 482.3 377 65.3
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.5e-134 482.3 391 64.2
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.9e-133 479.2 374 65.8
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.8e-133 478.8 327 73.4
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.1e-132 477.2 374 64.4
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 4.2e-132 475.3 374 65.0
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 8.0e-131 471.1 369 66.7
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.6e-129 466.1 321 74.5
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 4.4e-129 465.3 374 64.7
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 5.9e-126 454.9 373 61.4
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.8e-125 452.2 379 63.1
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.9e-124 449.9 360 67.8
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.8e-123 446.0 376 62.5
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 6.1e-123 444.9 374 60.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.0e-122 442.6 366 63.4
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 5.4e-119 431.8 290 76.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-117 426.4 352 61.4
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.6e-117 424.5 327 68.2
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.3e-116 422.2 327 67.0
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 8.9e-114 414.5 371 57.4
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 7.5e-113 411.4 398 54.0
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.4e-105 385.6 385 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 2.7e-102 376.3 371 53.4
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.1e-100 370.9 316 60.1
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.0e-98 362.5 308 62.7
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.4e-97 359.4 287 63.4
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.6e-81 306.6 189 82.5
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.1e-70 270.4 161 83.2
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.5e-70 269.6 150 88.7
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 3.5e-70 269.6 381 42.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-67 259.6 258 56.6
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 6.9e-66 255.4 256 51.2
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.5e-60 236.9 329 43.8
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.3e-56 224.6 245 48.6
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-54 217.6 159 71.1
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.3e-53 213.8 326 40.5
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 5.3e-50 202.6 181 54.1
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.4e-49 199.9 174 61.5
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-46 191.4 174 59.8
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.4e-41 173.3 228 40.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.0e-37 161.8 133 66.9
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 2.3e-37 160.6 133 66.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.0e-36 157.5 159 46.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.8e-32 143.3 121 63.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.1e-31 141.7 81 87.7
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.6e-25 120.6 96 57.3
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.0e-24 116.3 84 69.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.5e-23 114.8 128 49.2
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 5.9e-17 92.8 183 37.2
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.0e-16 92.0 51 88.2
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.0e-16 92.0 51 88.2
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.1e-14 84.3 87 51.7


User provided reference genes

Program Settings