Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.1e-100 368.6 272 100.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.1e-94 350.5 257 84.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.0e-94 349.7 257 84.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 5.7e-78 295.0 167 90.4
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.4e-76 288.5 191 85.9
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 5.4e-76 288.5 191 85.9
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.6e-75 287.0 190 86.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.1e-73 280.8 165 87.3
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.5e-73 279.6 166 86.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.6e-72 275.8 162 86.4
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.1e-72 275.0 196 74.5
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.0e-71 274.2 163 85.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-71 273.5 163 85.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.3e-71 273.1 187 81.8
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 3.0e-71 272.7 166 84.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 6.8e-71 271.6 203 73.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 6.8e-71 271.6 208 78.8
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.2e-70 270.8 167 83.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.4e-70 269.2 167 82.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.4e-70 269.2 194 72.7
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 4.4e-70 268.9 193 79.8
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 7.5e-70 268.1 208 76.4
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 7.5e-70 268.1 199 73.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 7.5e-70 268.1 193 75.6
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 9.8e-70 267.7 165 84.2
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.2e-69 266.5 194 74.2
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.7e-69 265.8 166 83.1
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.7e-69 265.8 206 75.7
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.7e-69 265.8 194 73.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.7e-69 265.8 208 74.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.9e-69 265.4 164 81.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 4.9e-69 265.4 167 80.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-68 264.2 166 82.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-68 264.2 166 82.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.4e-68 263.8 195 73.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-68 263.8 193 77.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.8e-68 263.5 165 83.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.4e-68 263.1 156 85.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 3.1e-68 262.7 199 72.9
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.1e-68 262.7 199 75.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 4.1e-68 262.3 192 75.0
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.1e-68 262.3 166 83.1
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.1e-68 262.3 198 72.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.0e-68 261.5 167 81.4
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 7.0e-68 261.5 167 79.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 9.2e-68 261.2 165 81.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.6e-67 260.4 169 80.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.0e-67 260.0 168 81.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 2.0e-67 260.0 208 74.5
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.0e-67 260.0 164 81.7
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.0e-67 260.0 194 72.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.7e-67 259.6 199 73.4
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.5e-67 258.8 203 71.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.5e-67 258.8 198 77.8
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 4.5e-67 258.8 167 80.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 5.9e-67 258.5 184 77.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 5.9e-67 258.5 164 82.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 5.9e-67 258.5 162 81.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 7.7e-67 258.1 152 86.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 7.7e-67 258.1 152 86.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 7.7e-67 258.1 166 80.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 7.7e-67 258.1 152 86.8
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 168 80.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.0e-66 257.7 198 72.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.3e-66 257.3 152 86.2
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.3e-66 257.3 194 72.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.7e-66 256.9 203 73.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.9e-66 256.1 151 86.8
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.9e-66 256.1 284 76.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.8e-66 255.8 152 86.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.8e-66 255.8 204 71.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 6.6e-66 255.0 162 83.3
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 6.6e-66 255.0 162 83.3
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 6.6e-66 255.0 162 83.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.6e-66 255.0 143 90.2
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.6e-66 255.0 203 73.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.6e-66 255.0 154 83.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 8.6e-66 254.6 154 82.5
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 8.6e-66 254.6 153 85.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-65 254.2 162 83.3
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.1e-65 254.2 162 83.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.9e-65 253.4 205 69.8
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.5e-65 253.1 163 81.0
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.5e-65 253.1 163 81.0
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.3e-65 252.7 160 81.9
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.3e-65 252.7 168 79.8
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.3e-65 252.7 165 80.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 5.6e-65 251.9 160 81.9
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.6e-65 251.9 160 81.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.6e-65 251.9 199 70.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 7.3e-65 251.5 172 76.7
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 7.3e-65 251.5 170 79.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.5e-65 251.1 208 71.2
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.5e-65 251.1 200 75.0
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.5e-65 251.1 152 84.2
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.1e-64 250.0 201 70.6
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.8e-64 249.6 148 85.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.8e-64 249.6 173 79.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 6.1e-64 248.4 153 85.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.0e-63 247.7 153 82.4
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.8e-63 246.9 154 82.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.8e-63 246.9 154 82.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.8e-63 246.9 153 83.7
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.3e-63 246.5 204 67.6
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 3.0e-63 246.1 153 83.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.0e-63 246.1 164 79.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.0e-63 245.7 155 82.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.2e-63 245.4 146 85.6
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 8.9e-63 244.6 173 75.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.5e-62 243.8 193 69.4
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.5e-62 243.8 201 72.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-62 243.8 201 72.6
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-62 243.4 201 72.1
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.0e-62 243.4 166 76.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.6e-62 243.0 153 81.0
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.4e-62 242.7 151 82.8
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.4e-62 242.7 294 69.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.7e-62 241.9 154 80.5
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 5.7e-62 241.9 197 66.5
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.5e-62 241.5 152 82.2
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.7e-61 240.4 201 71.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.7e-61 240.4 141 86.5
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 3.7e-61 239.2 166 75.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.8e-60 236.9 149 81.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.1e-60 235.7 154 77.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 4.1e-60 235.7 148 82.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.7e-59 233.0 197 70.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.5e-59 232.6 158 79.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 4.6e-59 232.3 150 82.0
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 5.9e-59 231.9 153 79.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 7.8e-59 231.5 157 77.7
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 5.0e-58 228.8 135 85.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.2e-56 224.2 160 75.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 6.8e-55 218.4 162 71.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.3e-53 214.2 131 84.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 9.2e-52 208.0 144 75.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 7.8e-51 204.9 195 62.1
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 7.8e-51 204.9 195 62.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.3e-49 199.1 201 59.2
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.6e-48 197.2 197 57.9
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 6.2e-48 195.3 129 77.5
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.2e-48 195.3 163 67.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.1e-47 194.5 164 65.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-47 194.1 123 79.7
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 7.5e-46 188.3 160 61.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.3e-42 176.8 152 60.5
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.9e-42 176.0 166 60.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-40 170.6 110 79.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 8.1e-40 168.3 124 71.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 6.0e-35 152.1 94 79.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 6.2e-32 142.1 95 76.8
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.8e-31 140.6 193 47.7
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.8e-31 140.6 193 47.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.1e-31 139.8 102 70.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.0e-31 139.4 165 50.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.2e-31 139.0 192 47.4
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.2e-27 127.9 137 51.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.4e-22 109.8 145 51.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 6.0e-19 99.0 53 90.6
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.6e-14 82.0 69 65.2
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 9.9e-14 81.6 62 69.4
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.7e-13 80.9 52 71.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 4.9e-13 79.3 107 53.3


User provided reference genes

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