Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 8.3e-296 1019.6 513 100.0
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.2e-177 627.1 516 63.4
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.3e-175 619.0 516 62.4
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 5.2e-173 611.7 516 59.5
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.4e-172 609.0 516 59.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 7.0e-170 601.3 516 57.9
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.1e-167 594.0 516 58.5
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.5e-167 592.8 512 58.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.3e-167 592.0 516 58.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.6e-167 591.7 516 58.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 7.3e-167 591.3 516 58.1
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 7.3e-167 591.3 516 58.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.8e-166 589.3 523 57.6
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.6e-166 589.0 516 58.5
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 8.1e-166 587.8 515 57.5
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.1e-165 587.4 516 57.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.8e-165 586.6 516 57.8
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.3e-165 586.3 516 58.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.2e-164 583.9 516 57.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.5e-164 583.6 516 57.6
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.0e-164 583.2 499 59.9
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.4e-164 582.0 512 57.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.8e-164 581.6 516 57.4
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 7.5e-164 581.3 517 57.6
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 7.5e-164 581.3 516 56.8
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.3e-163 580.5 515 57.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.2e-163 579.7 516 58.5
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.2e-163 579.7 516 56.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.9e-163 579.3 516 56.8
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.7e-163 578.9 516 57.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 4.9e-163 578.6 516 57.2
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.4e-163 578.2 513 57.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 6.4e-163 578.2 516 56.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 8.3e-163 577.8 516 57.6
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-162 577.4 513 57.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-162 577.4 513 57.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-162 577.0 513 57.5
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.4e-162 577.0 512 56.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.2e-162 575.9 512 56.1
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 7.1e-162 574.7 516 56.4
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 7.1e-162 574.7 516 56.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 9.2e-162 574.3 516 56.2
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.1e-161 573.2 512 57.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.6e-161 572.0 517 56.5
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.6e-161 572.0 516 56.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 6.0e-161 571.6 513 56.9
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.0e-161 571.6 516 55.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 6.0e-161 571.6 516 57.0
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.0e-160 569.3 522 58.4
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-160 569.3 511 57.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.9e-160 568.9 512 56.8
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 5.1e-160 568.5 515 55.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.1e-160 568.5 516 56.4
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.6e-160 568.2 517 57.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.6e-160 567.8 516 56.4
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.1e-159 567.4 516 56.8
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.1e-159 567.4 516 56.4
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.5e-159 567.0 573 52.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.3e-159 564.7 515 55.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.8e-158 562.8 517 55.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.2e-158 561.6 516 54.5
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 8.1e-158 561.2 517 55.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.1e-157 560.8 516 54.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.4e-157 560.5 517 55.9
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.0e-157 558.9 516 55.6
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 5.2e-157 558.5 538 54.6
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.2e-156 557.4 511 54.0
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.4e-156 555.4 515 56.7
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.4e-156 555.4 516 54.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.2e-155 553.1 516 53.9
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.4e-155 551.6 516 53.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.1e-154 550.8 481 58.2
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-154 550.4 516 53.7
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 2.4e-154 549.7 516 54.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.1e-154 548.9 516 53.7
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 9.2e-154 547.7 511 53.6
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.0e-152 544.3 526 54.4
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.0e-152 544.3 516 55.2
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.0e-148 530.0 511 54.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.4e-148 529.3 516 54.8
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.1e-145 520.0 517 51.6
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.0e-145 518.5 512 51.0
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 7.8e-145 518.1 516 51.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.0e-144 517.7 512 51.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.3e-144 517.3 516 51.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.7e-144 516.9 516 51.2
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.3e-144 516.5 512 51.0
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.3e-144 516.5 512 51.0
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.6e-143 511.9 516 50.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 9.6e-143 511.1 516 50.8
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-142 510.4 512 53.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.8e-142 509.6 513 53.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.4e-140 502.3 482 55.2
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.4e-139 498.0 516 49.8
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 4.2e-138 495.7 538 50.6
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.1e-138 495.0 509 53.2
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.5e-135 486.5 501 51.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.3e-135 486.1 460 54.8
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 9.6e-135 484.6 499 49.9
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 6.2e-134 481.9 543 47.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.6e-129 467.2 467 53.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.8e-126 456.4 516 48.8
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 5.3e-125 452.2 410 58.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.5e-123 445.3 512 49.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 8.4e-123 444.9 409 56.0
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.5e-121 439.5 409 55.3
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.5e-119 433.3 514 46.3
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 3.8e-115 419.5 511 45.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.2e-114 416.4 382 53.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.3e-112 410.2 516 45.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 8.7e-112 408.3 515 44.5
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 3.1e-109 399.8 515 42.7
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.9e-107 393.3 391 52.9
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 9.1e-101 371.7 407 48.2
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.4e-88 331.3 465 38.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.3e-88 330.5 512 37.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 4.0e-88 329.7 499 39.7
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-87 328.2 284 59.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.5e-58 231.5 205 56.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 8.3e-54 215.7 196 55.1
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.3e-50 203.4 257 45.9
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.3e-43 181.0 210 47.1
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.2e-41 175.3 546 28.2
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.4e-38 162.9 144 56.2
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 2.4e-32 144.4 159 48.4
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.2e-32 143.3 108 63.9
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.1e-29 135.6 123 54.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.4e-29 135.2 252 35.7
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.2e-28 132.1 184 42.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.6e-28 131.7 116 55.2
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.7e-28 131.0 96 62.5
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.7e-28 131.0 92 67.4
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.7e-27 128.3 126 53.2
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.3e-26 123.6 197 41.6
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.1e-25 121.3 97 59.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.9e-24 116.3 82 69.5
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.2e-22 111.3 94 54.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-21 108.6 190 35.3
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.0e-19 102.4 197 32.0
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 4.3e-18 97.1 72 65.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.4e-13 81.3 168 31.0
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 4.6e-12 77.0 105 41.9
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 2.3e-11 74.7 95 43.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.3e-11 74.7 171 29.8
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 5.1e-11 73.6 56 58.9
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 6.2e-09 66.6 186 25.8
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-08 64.3 133 37.6
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.0e-08 63.9 48 60.4
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 5.3e-08 63.5 86 40.7
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.2e-06 58.2 163 30.7


User provided reference genes

Program Settings