Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1719.5 867 100.0
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1371.3 865 78.6
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1347.4 865 77.2
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1342.4 863 76.7
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1340.5 863 76.6
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1340.5 863 76.6
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1340.1 866 75.3
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1332.4 865 76.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1332.4 866 75.2
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1330.5 865 76.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1325.8 860 76.7
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 866 75.3
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1318.9 866 75.3
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1315.8 865 75.3
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 867 74.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 860 75.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 866 74.0
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1308.1 865 74.9
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1305.8 861 75.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1303.1 884 72.7
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1301.2 872 74.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1299.3 861 75.4
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1299.3 865 74.5
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1297.0 861 75.3
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1295.0 865 75.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1294.6 886 73.0
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1291.9 865 74.3
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1289.6 866 73.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1288.1 860 73.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1287.3 900 71.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1280.4 865 73.3
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1278.5 865 73.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1277.7 868 73.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 865 72.4
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1271.1 861 72.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1270.8 865 72.9
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1270.8 864 73.1
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 868 73.4
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 864 72.6
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 861 72.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1267.7 864 72.1
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1263.4 865 72.8
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1263.1 861 73.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1260.0 865 72.4
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 832 75.2
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 866 72.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1258.4 866 72.6
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1238.0 865 70.8
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1238.0 865 72.1
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1237.2 866 71.0
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1235.3 860 70.3
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1234.2 932 67.7
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1231.9 839 72.6
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1226.5 866 70.7
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 862 71.9
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1219.9 859 70.8
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1212.6 865 70.4
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 862 69.5
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1211.4 863 70.7
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1209.5 862 69.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1208.7 865 70.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 865 68.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1206.4 863 70.0
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 865 68.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 866 68.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 862 69.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 1010 62.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1201.4 865 70.5
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 861 68.5
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 865 68.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1198.3 865 68.1
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1196.8 865 68.0
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1195.3 865 68.0
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1193.7 865 68.6
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1192.9 880 68.5
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1185.2 860 69.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1183.3 865 67.6
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 860 68.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 866 68.5
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 865 69.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1174.1 912 65.1
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1172.5 875 68.3
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1164.4 920 65.8
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1164.1 865 66.8
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1159.1 869 66.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1151.3 887 68.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1143.3 864 66.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1138.6 949 63.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1135.9 876 65.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1109.4 862 63.0
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1095.9 793 69.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-311 1072.8 942 60.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 2.1e-307 1058.9 890 63.1
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.2e-302 1043.1 697 74.0
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 2.1e-299 1032.3 748 70.9
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.6e-299 1031.6 793 67.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 2.7e-283 978.8 651 74.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.5e-268 927.9 878 53.5
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.4e-265 918.3 879 52.7
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 8.6e-261 904.0 872 52.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 8.3e-256 887.5 623 70.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 7.8e-230 801.2 872 45.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.8e-227 792.0 495 81.0
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 7.4e-212 741.5 555 66.8
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.1e-210 736.1 583 66.0
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.3e-210 735.3 878 47.7
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 5.8e-201 705.3 968 41.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 2.8e-187 659.8 857 45.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.4e-186 656.8 487 68.6
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 5.7e-180 635.6 501 62.3
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.0e-177 627.1 382 78.5
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 7.2e-175 618.6 482 63.3
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 8.5e-168 595.1 445 66.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.8e-157 560.8 327 84.1
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 7.5e-140 502.3 615 47.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.1e-130 469.2 378 62.4
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.6e-89 333.6 236 69.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.3e-88 332.0 388 50.3
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 7.2e-82 309.7 163 85.3
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 6.1e-73 280.0 662 30.5
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 5.5e-58 230.3 700 27.0
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 4.8e-46 190.7 217 50.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.2e-38 165.2 526 26.8
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-36 157.9 126 59.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.8e-33 148.3 115 64.3
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 6.8e-32 143.7 127 59.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 8.9e-32 143.3 155 50.3
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.5e-26 125.9 676 21.3
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.2e-25 120.6 121 51.2
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 9.2e-21 106.7 98 53.1
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.8e-16 90.5 42 88.1
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 3.4e-15 88.2 91 48.4
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.4e-15 88.2 133 39.1
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.4e-08 66.2 52 57.7
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 1.3e-06 59.7 28 89.3
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.9e-06 58.5 66 47.0


User provided reference genes

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