Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.7e-165 585.9 293 100.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.7e-104 383.3 303 64.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.8e-65 251.5 240 52.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.0e-64 251.1 261 51.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.7e-64 250.4 246 53.3
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.7e-64 250.4 243 53.9
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.5e-63 244.6 246 52.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.6e-62 243.8 246 52.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 3.6e-62 242.7 242 50.8
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 4.7e-62 242.3 293 46.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 6.2e-62 241.9 247 50.6
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.4e-61 240.7 247 50.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.1e-61 239.6 243 51.4
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-60 237.3 247 52.2
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.6e-60 236.5 249 48.6
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.8e-60 235.3 242 50.8
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 7.6e-60 235.0 239 52.7
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.6e-60 235.0 241 51.0
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-59 234.2 241 51.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.7e-59 233.8 247 50.2
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 2.2e-59 233.4 245 49.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.2e-59 233.4 241 51.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.9e-59 233.0 242 49.6
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.9e-59 233.0 246 51.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-59 232.6 256 49.6
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.4e-59 231.9 259 49.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.4e-59 231.9 259 49.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-58 231.1 253 50.2
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-58 230.7 255 50.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-58 230.3 259 49.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-58 230.3 249 50.2
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.4e-58 229.9 240 48.8
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.4e-58 229.9 255 50.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-58 229.6 255 50.2
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 5.4e-58 228.8 244 48.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 5.4e-58 228.8 240 50.4
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.6e-57 227.3 239 51.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.6e-57 227.3 241 49.8
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.1e-57 226.9 241 50.2
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.1e-57 226.9 258 47.7
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.7e-57 226.5 242 47.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-57 226.5 247 51.0
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.7e-57 226.5 241 49.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.5e-57 226.1 242 50.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.8e-57 224.9 259 49.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-56 224.2 242 50.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.3e-56 224.2 255 46.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.0e-56 223.0 241 49.8
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.9e-56 222.6 239 48.1
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-56 222.6 259 48.6
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.9e-56 222.6 244 50.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 6.6e-56 221.9 249 47.4
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.6e-56 221.9 242 49.6
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-56 221.9 244 48.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 6.6e-56 221.9 253 48.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 8.7e-56 221.5 220 51.4
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 8.7e-56 221.5 244 48.8
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.5e-55 220.7 243 49.8
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.9e-55 220.3 238 48.7
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.5e-55 219.9 244 48.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.5e-55 219.9 244 48.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.6e-55 218.8 242 48.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 5.6e-55 218.8 239 49.4
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 9.6e-55 218.0 249 46.2
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 9.6e-55 218.0 248 46.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.3e-54 217.6 243 47.3
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.1e-54 216.9 244 47.5
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.1e-54 216.9 244 47.5
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.1e-54 216.9 239 48.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.8e-54 216.5 239 48.5
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.8e-54 216.5 244 47.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.6e-54 216.1 243 50.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.6e-54 216.1 243 50.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.6e-54 216.1 267 45.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.6e-54 216.1 254 49.6
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.6e-54 216.1 243 51.0
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.1e-54 214.9 243 48.6
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-53 214.5 243 46.1
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.4e-53 214.2 245 49.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.4e-53 214.2 241 48.5
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-53 213.4 250 48.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.4e-53 213.4 246 46.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.1e-53 213.0 244 46.7
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.0e-53 212.6 247 45.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.0e-53 212.6 239 48.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.9e-53 211.8 239 47.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 9.0e-53 211.5 244 47.1
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.2e-52 211.1 242 48.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-52 210.3 250 47.2
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 2.0e-52 210.3 245 47.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.6e-52 209.9 254 45.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.8e-52 208.8 245 45.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.8e-52 208.8 245 45.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.2e-51 206.8 276 44.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.2e-51 206.8 255 46.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.8e-51 206.1 244 46.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-50 204.1 219 50.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.9e-50 203.8 258 44.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.4e-50 203.4 248 46.8
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.4e-50 203.4 248 46.8
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-50 203.4 245 44.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 3.2e-50 203.0 246 44.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.2e-50 202.6 246 46.7
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 7.1e-50 201.8 251 47.0
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-49 200.7 245 44.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.7e-49 199.9 243 45.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.5e-49 199.5 245 44.1
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.8e-49 198.4 242 44.6
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-48 198.0 245 46.1
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.0e-48 198.0 246 46.7
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.7e-48 197.2 249 45.4
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.3e-48 196.8 243 45.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.3e-48 196.8 264 44.3
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.0e-48 196.4 245 45.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.9e-48 196.1 246 45.5
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.9e-48 196.1 204 51.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 6.6e-48 195.3 253 45.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 8.7e-48 194.9 245 45.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-47 194.5 252 45.6
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-47 194.5 250 46.0
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.5e-47 194.1 248 44.0
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-47 194.1 250 45.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.9e-47 193.7 241 43.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.9e-47 193.7 207 49.3
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.3e-47 193.0 263 41.1
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 7.3e-47 191.8 252 45.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 9.6e-47 191.4 245 42.9
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.1e-46 190.3 249 44.6
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.1e-46 190.3 245 46.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 6.2e-46 188.7 257 42.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-45 188.0 241 43.2
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.4e-45 187.6 240 44.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.8e-45 187.2 221 45.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-45 187.2 205 49.8
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 3.1e-45 186.4 196 49.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 4.0e-45 186.0 265 41.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-44 184.5 199 48.2
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.5e-44 184.1 242 44.2
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-44 183.7 252 44.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.0e-44 183.7 252 44.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.6e-44 183.3 237 41.8
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-43 181.0 250 44.4
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.3e-43 181.0 172 54.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-42 177.9 247 42.1
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.4e-42 177.6 231 45.9
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 6.0e-41 172.2 241 41.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 6.0e-41 172.2 262 40.1
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.8e-40 170.6 160 53.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.5e-39 167.5 246 41.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.5e-39 166.8 240 40.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.5e-39 166.8 237 41.8
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 5.6e-39 165.6 227 40.1
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.6e-38 164.1 156 51.3
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.5e-35 152.1 168 47.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.9e-34 150.6 172 46.5
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-33 147.9 263 38.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 4.6e-33 146.0 267 36.0
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 7.9e-33 145.2 168 47.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.0e-32 144.8 274 36.1
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.3e-31 139.8 140 50.0
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.0e-29 132.9 206 41.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.3e-29 132.5 250 38.0
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.7e-25 120.2 128 50.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.7e-25 120.2 87 63.2
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-23 114.4 210 37.1
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.3e-22 111.3 116 50.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 3.7e-22 109.8 147 42.2
Zm00001eb030490 Zea mays HOM05D028996 ORTHO05D004375 4.8e-22 109.4 120 52.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-21 108.2 191 36.6
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 1.1e-21 108.2 87 64.4
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.4e-21 107.8 169 36.7
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.2e-19 100.5 191 33.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.6e-17 94.4 78 47.4
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 6.1e-17 92.4 70 60.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.4e-16 91.3 135 38.5
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.7e-14 84.3 129 36.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.7e-12 75.5 82 45.1
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-11 73.9 110 38.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.7e-09 67.0 140 31.4
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.8e-08 64.3 97 38.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.0e-07 60.8 170 27.1


User provided reference genes

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