Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.0e-208 728.0 410 100.0
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.5e-117 427.2 296 69.3
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 2.5e-117 426.4 323 64.7
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.1e-116 423.3 329 64.1
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 2.1e-116 423.3 327 65.4
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.7e-116 422.9 325 65.2
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 3.6e-116 422.5 321 67.0
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 1.8e-115 420.2 297 70.0
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 2.3e-115 419.9 324 66.0
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 2.3e-115 419.9 296 67.9
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 3.0e-115 419.5 337 63.2
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 3.0e-115 419.5 331 65.0
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 4.0e-115 419.1 296 69.3
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.8e-115 418.3 296 69.3
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 8.8e-115 417.9 295 68.8
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 8.8e-115 417.9 295 68.8
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.2e-114 417.5 300 68.7
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 2.6e-114 416.4 300 68.3
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.6e-114 416.4 293 66.6
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 5.7e-114 415.2 325 63.1
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 7.5e-114 414.8 300 68.3
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 7.5e-114 414.8 310 67.4
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 9.8e-114 414.5 305 66.9
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 1.3e-113 414.1 296 68.2
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 1.3e-113 414.1 323 64.1
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.7e-113 413.7 300 68.3
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.7e-113 413.7 300 68.3
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.7e-113 413.7 300 67.0
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.7e-113 413.7 344 62.8
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 2.2e-113 413.3 320 65.3
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 2.2e-113 413.3 309 65.7
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.8e-113 412.9 327 64.2
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.8e-113 412.9 327 64.2
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 2.8e-113 412.9 310 65.2
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.7e-113 412.5 311 66.2
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 6.3e-113 411.8 310 64.8
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 8.3e-113 411.4 327 64.5
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 1.1e-112 411.0 283 70.3
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.4e-112 410.6 321 63.6
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.8e-112 410.2 289 68.5
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 2.4e-112 409.8 322 63.7
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 3.1e-112 409.5 319 65.5
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 3.1e-112 409.5 321 66.0
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 5.4e-112 408.7 300 67.7
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 9.1e-112 407.9 327 62.4
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 1.2e-111 407.5 296 67.9
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.6e-111 407.1 306 65.4
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.6e-111 407.1 299 67.9
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 5.9e-111 405.2 315 64.1
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.0e-110 404.4 325 63.1
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.7e-110 403.7 313 65.2
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.7e-110 403.7 295 66.8
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 2.2e-110 403.3 299 67.2
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.0e-110 402.1 313 65.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 8.5e-110 401.4 323 63.5
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.9e-109 400.2 318 63.8
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.5e-109 399.8 289 68.2
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.2e-108 397.5 283 68.2
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.2e-108 397.5 315 63.5
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 4.7e-108 395.6 346 59.0
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 6.1e-108 395.2 347 58.8
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.2e-106 391.0 338 58.9
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 4.4e-106 389.0 332 62.3
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 5.7e-106 388.7 296 64.5
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.7e-106 388.7 302 64.9
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 9.8e-106 387.9 271 69.4
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.7e-105 387.1 325 61.5
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 2.2e-105 386.7 267 68.5
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.8e-105 386.3 335 60.0
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 4.9e-105 385.6 316 61.4
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.1e-104 384.4 319 63.9
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 1.8e-104 383.6 341 58.4
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.4e-104 383.3 320 61.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 7.0e-104 381.7 352 57.7
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.9e-101 373.6 341 57.5
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.9e-101 373.6 369 53.1
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 3.6e-100 369.4 298 62.4
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 2.3e-99 366.7 252 69.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.5e-98 364.0 399 49.9
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.3e-97 360.9 245 67.3
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.9e-97 359.8 330 57.0
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 2.9e-97 359.8 263 64.6
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.8e-96 357.1 313 60.4
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.2e-95 354.4 235 71.9
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.7e-94 350.5 289 61.6
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 3.9e-94 349.4 322 56.2
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.6e-92 344.0 279 61.6
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 2.3e-91 340.1 320 56.2
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 2.6e-90 336.7 331 54.1
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.6e-90 336.7 387 48.8
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 7.5e-90 335.1 375 49.9
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 6.4e-89 332.0 346 52.0
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.4e-88 328.9 222 70.3
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 7.0e-88 328.6 222 70.3
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 7.8e-87 325.1 336 52.7
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.1e-85 321.2 221 70.6
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.5e-82 310.8 260 61.2
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.0e-82 310.5 313 50.5
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 8.3e-81 305.1 229 65.5
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.1e-80 304.7 215 67.9
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.2e-80 303.1 317 48.3
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 2.1e-76 290.4 318 48.7
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 2.3e-75 287.0 251 57.4
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 5.2e-75 285.8 330 48.8
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.5e-74 284.3 189 70.9
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.0e-70 270.0 317 44.2
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 9.6e-61 238.4 302 45.7
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 4.8e-60 236.1 195 63.6
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 4.0e-59 233.0 261 46.0
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.5e-58 231.1 189 62.4
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 2.2e-49 200.7 270 38.9
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.5e-45 188.0 353 30.9
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 3.8e-41 173.3 112 70.5
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 2.5e-40 170.6 112 70.5
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-38 164.5 119 68.1
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.7e-38 162.5 318 37.1
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 6.5e-33 146.0 103 66.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.1e-30 136.3 101 65.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.0e-25 122.1 77 72.7
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 6.5e-25 119.4 76 72.4
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.9e-24 117.9 84 64.3
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 4.6e-23 113.2 77 67.5
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.3e-21 107.1 95 57.9
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.2e-15 88.6 98 54.1
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.2e-15 88.6 115 47.8
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 2.3e-14 84.3 79 53.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 1.3e-12 78.6 99 47.5
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 1.4e-11 75.1 122 40.2
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 5.3e-11 73.2 323 28.5
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 1.6e-10 71.6 52 65.4
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 1.8e-06 58.2 148 25.7


User provided reference genes

Program Settings