Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.7e-202 708.0 358 100.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 7.1e-169 597.4 358 83.5
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.9e-127 458.8 361 63.4
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 6.7e-127 458.0 369 62.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 6.7e-127 458.0 360 64.7
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.0e-126 456.4 366 62.8
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.6e-126 456.1 369 62.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 3.3e-126 455.7 369 62.9
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 4.4e-126 455.3 367 63.2
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 4.4e-126 455.3 366 62.6
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 4.4e-126 455.3 362 62.2
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 9.7e-126 454.1 370 61.6
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.3e-125 453.8 361 62.6
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.3e-125 453.8 367 62.9
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.3e-125 453.8 371 62.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.3e-125 453.8 360 63.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-125 453.4 369 62.3
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.7e-125 453.4 369 62.3
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 2.2e-125 453.0 373 61.4
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 2.8e-125 452.6 366 61.5
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 2.8e-125 452.6 366 61.5
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.8e-125 452.6 361 62.6
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.7e-125 452.2 371 60.1
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 3.7e-125 452.2 361 64.5
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.8e-125 451.8 360 62.5
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 6.3e-125 451.4 371 61.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 8.2e-125 451.1 360 63.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.1e-124 450.7 371 61.7
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.8e-124 449.9 371 60.4
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.4e-124 449.5 360 61.9
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 3.1e-124 449.1 372 61.8
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 4.1e-124 448.7 366 61.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 4.1e-124 448.7 360 62.5
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 5.3e-124 448.4 372 60.8
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 6.9e-124 448.0 371 61.2
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 6.9e-124 448.0 368 61.7
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 6.9e-124 448.0 374 61.0
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.9e-124 448.0 359 63.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 9.1e-124 447.6 360 63.1
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.6e-123 446.0 360 61.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 2.6e-123 446.0 361 63.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 5.9e-123 444.9 379 61.2
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.3e-122 443.7 374 60.2
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.9e-122 442.6 374 60.2
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 5.0e-122 441.8 360 60.6
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 6.5e-122 441.4 366 60.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 8.5e-122 441.0 371 60.6
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 8.5e-122 441.0 374 59.9
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.1e-121 440.7 368 60.6
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 4.2e-121 438.7 362 60.2
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 9.4e-121 437.6 362 61.9
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 9.4e-121 437.6 360 60.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 9.4e-121 437.6 367 59.9
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.2e-120 437.2 359 61.8
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.7e-120 436.0 360 60.6
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.6e-120 435.6 361 62.3
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.7e-120 435.3 373 59.0
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 6.1e-120 434.9 381 58.8
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.4e-119 433.7 373 58.7
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.4e-119 433.7 361 63.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.8e-119 433.3 374 59.9
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.3e-119 433.0 360 61.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.9e-119 432.2 361 62.3
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 8.8e-119 431.0 363 60.1
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.5e-118 430.3 362 59.9
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 2.6e-118 429.5 361 61.8
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.3e-118 429.1 361 60.7
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.3e-118 429.1 362 60.2
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 5.7e-118 428.3 361 60.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 9.7e-118 427.6 368 59.8
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 9.7e-118 427.6 360 61.1
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.3e-117 427.2 361 61.8
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.2e-117 426.4 384 58.6
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.2e-117 426.4 360 57.8
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.2e-117 426.4 359 59.6
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.8e-117 426.0 362 59.9
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 2.8e-117 426.0 361 60.7
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 4.8e-117 425.2 367 58.3
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.8e-117 425.2 362 60.5
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 4.8e-117 425.2 361 62.6
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.8e-117 425.2 362 59.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 6.3e-117 424.9 361 61.5
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-116 424.1 362 59.7
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.8e-116 423.3 381 57.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.1e-116 422.5 361 60.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.1e-116 422.2 367 59.7
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 9.1e-116 421.0 360 59.2
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.6e-115 419.5 364 58.2
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 7.7e-115 417.9 357 59.4
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.7e-114 416.8 364 57.4
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 2.9e-114 416.0 361 59.8
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.5e-114 414.8 364 58.0
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.2e-113 412.5 364 57.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 4.2e-113 412.1 368 57.3
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 2.1e-112 409.8 361 59.3
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 2.1e-112 409.8 390 55.9
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 5.2e-111 405.2 375 55.2
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 8.8e-111 404.4 383 55.4
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 8.8e-111 404.4 383 55.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 2.6e-110 402.9 366 56.6
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 3.3e-110 402.5 366 57.1
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 3.7e-109 399.1 361 58.4
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.3e-109 398.3 378 55.0
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.1e-108 396.0 378 55.3
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 7.7e-107 391.3 313 63.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.3e-106 390.6 353 55.5
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.7e-106 390.2 307 62.9
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 6.8e-103 378.3 365 56.4
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.7e-102 375.2 356 54.8
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 5.7e-102 375.2 377 53.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-100 370.9 316 59.2
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.6e-99 367.1 293 62.8
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 5.9e-99 365.2 388 49.7
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.0e-95 352.4 358 52.0
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.1e-92 344.4 347 54.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-92 344.4 341 53.4
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 9.5e-89 331.3 356 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 3.4e-86 322.8 355 48.7
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.8e-86 321.2 316 53.8
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.2e-84 316.2 303 55.4
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.3e-82 310.1 371 47.7
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.6e-75 287.3 275 53.5
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.5e-73 280.8 270 52.2
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.4e-70 269.2 189 70.9
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.4e-63 247.7 161 73.3
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 2.0e-62 243.8 372 40.6
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.9e-62 241.5 150 78.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.4e-60 237.7 274 45.3
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-55 221.5 242 49.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 5.1e-50 202.6 218 49.1
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.8e-48 196.8 150 65.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.8e-47 194.1 181 52.5
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.0e-46 190.7 326 33.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.3e-44 181.8 175 53.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.0e-42 176.8 183 51.4
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.1e-39 168.3 238 42.0
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 2.4e-31 140.6 133 56.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 5.3e-31 139.4 133 55.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 2.7e-27 127.1 81 77.8
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.7e-27 127.1 121 57.0
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 4.6e-27 126.3 227 34.8
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.4e-23 114.0 159 40.3
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.5e-20 104.0 83 62.7
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.0e-17 94.4 84 46.4
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 8.2e-16 89.0 116 42.2
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.1e-15 88.6 161 37.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 9.1e-15 85.5 157 36.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 3.0e-10 70.5 187 28.9
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 8.8e-10 68.9 95 40.0


User provided reference genes

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