Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0586500 Oryza sativa ssp. japonica HOM05D003232 ORTHO05D003584 9.3e-53 209.9 105 100.0
Zm00001eb183380 Zea mays HOM05D003232 ORTHO05D003584 5.4e-08 61.2 31 96.8
Mapoly0005s0217 Marchantia polymorpha HOM05D003232 ORTHO05D003584 7.0e-08 60.8 31 96.8
Actinidia00834 Actinidia chinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Actinidia10586 Actinidia chinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Actinidia21105 Actinidia chinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Actinidia30363 Actinidia chinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Aa31LG5G18180 Aethionema arabicum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Ah.08g212130 Amaranthus hybridus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Ah.15g091770 Amaranthus hybridus HOM05D000416 ORTHO05D003584 1.6e-07 59.7 31 93.5
ATR0751G159 Amborella trichopoda HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Aqoxy6G02091 Aquilegia oxysepala HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
AL3G18950 Arabidopsis lyrata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
AT3G07590 Arabidopsis thaliana HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
MSTRG.17439 Avicennia marina HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
MSTRG.7032 Avicennia marina HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
EL10Ac7g17224 Beta vulgaris HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
BcaB04g21281 Brassica carinata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
BcaC05g29554 Brassica carinata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
C05p59710 Brassica napus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
BolC5t34625H Brassica oleracea HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
BraA03t12714Z Brassica rapa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CSS0013483 Camellia sinensis var. sinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CSS0048356 Camellia sinensis var. sinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CANSAT01G0406 Cannabis sativa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Carub.0003s0716 Capsella rubella HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CARHR082290 Cardamine hirsuta HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Cpa.g.sc136.74 Carica papaya HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Cpa.g.sc52.16 Carica papaya HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CiPaw.07G092900 Carya illinoinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CiPaw.08G104400 Carya illinoinensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
AUR62036796 Chenopodium quinoa HOM05D000416 ORTHO05D003584 1.6e-07 59.7 31 93.5
AUR62039911 Chenopodium quinoa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
ClCG11G018350 Citrullus lanatus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Cc01_g19630 Coffea canephora HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
CsaV3_3G044470 Cucumis sativus L. HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Dinv40899 Davidia involucrata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Duzib133G0526 Durio zibethinus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Duzib138G0852 Durio zibethinus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
ECA247G0841 Erigeron canadensis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Eucgr.K03379 Eucalyptus grandis HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Thhalv10005157m.g Eutrema salsugineum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Glyma.03G152100 Glycine max HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Glyma.19G154600 Glycine max HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.A08G068500 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.A11G121800 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.A11G146900 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.A12G005600 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.D08G076900 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.D08G203800 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.D11G127000 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.D11G153600 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gohir.D12G005100 Gossypium hirsutum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gorai.004G081600 Gossypium raimondii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gorai.004G215800 Gossypium raimondii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gorai.007G135700 Gossypium raimondii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gorai.007G163800 Gossypium raimondii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Gorai.008G005000 Gossypium raimondii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
HanXRQChr04g0114581 Helianthus annuus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
HanXRQChr10g0282791 Helianthus annuus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
HanXRQChr11g0334551 Helianthus annuus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Lsat_1_v5_gn_7_116380 Lactuca sativa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Lsat_1_v5_gn_9_4121 Lactuca sativa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Lj1C898G18 Lonicera japonica HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Manes.01G208900 Manihot esculenta HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Manes.05G075000 Manihot esculenta HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Nn1g07687 Nelumbo nucifera HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Nitab4.5_0000759g0100 Nicotiana tabacum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Nitab4.5_0001028g0110 Nicotiana tabacum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Nitab4.5_0008797g0020 Nicotiana tabacum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Nitab4.5_0014943g0020 Nicotiana tabacum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Oeu013014.1 Olea europaea HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Peaxi162Scf00570g00713 Petunia axillaris HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Phvul.001G149700 Phaseolus vulgaris HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Potri.002G054800 Populus trichocarpa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Potri.005G207900 Populus trichocarpa HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
PGR044G1675 Punica granatum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
PGR044G1843 Punica granatum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
PGR102G2408 Punica granatum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
QL12p022157 Quercus lobata HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Sabra05G0158300 Salix brachista HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Sp2g18650 Schrenkiella parvula HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Sed0026841 Sechium edule HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Hund05351 Selenicereus undatus HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Solyc06g084310.4 Solanum lycopersicum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Solyc09g064660.4 Solanum lycopersicum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Sopen06g035700 Solanum pennellii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Sopen09g026350 Solanum pennellii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
PGSC0003DMG400020134 Solanum tuberosum HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 1.6e-07 59.7 31 93.5
SGA_v2.0_scaffold1G00460 Striga asiatica HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
SGA_v2.0_scaffold80G25937 Striga asiatica HOM05D000416 ORTHO05D000322 1.6e-07 59.7 31 93.5
SGA_v2.0_scaffold81G25987 Striga asiatica HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
THA.LOC104801227 Tarenaya hassleriana HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
THA.LOC104819017 Tarenaya hassleriana HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Thecc.01G201400 Theobroma cacao HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
TWI14G0594 Tripterygium wilfordii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
TWI23G1159 Tripterygium wilfordii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
TWI59G0904 Tripterygium wilfordii HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
TAR626G0272 Trochodendron aralioides HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
vmacro02561 Vaccinium macrocarpon HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
HPP92_015746 Vanilla planifolia HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
VMungo1383G3581 Vigna mungo HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
GSVIVG01011117001 Vitis vinifera HOM05D003232 ORTHO05D003584 1.6e-07 59.7 31 93.5
Atru.chr5.1398 Acer truncatum HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Actinidia24883 Actinidia chinensis HOM05D001305 ORTHO05D007147 2.0e-07 59.3 59 62.7
AL1G12710 Arabidopsis lyrata HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
AT4G02840 Arabidopsis thaliana HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
arahy.Tifrunner.gnm1.ann1.3GK7M3 Arachis hypogaea HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
arahy.Tifrunner.gnm1.ann1.S6MYLT Arachis hypogaea HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Carub.0006s3421 Capsella rubella HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
CARHR251210 Cardamine hirsuta HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Ca_08574_v3 Cicer arietinum L. HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Ca_09763_v3 Cicer arietinum L. HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Ciclev10022934m.g Citrus clementina HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Dinv32947 Davidia involucrata HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Thhalv10029079m.g Eutrema salsugineum HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Glyma.02G096000 Glycine max HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Glyma.18G285500 Glycine max HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Gohir.A08G185700 Gossypium hirsutum HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Lj1g0025963 Lotus japonicus HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Lj5g0027009 Lotus japonicus HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Lalb_Chr06g0163051 Lupinus albus HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Lalb_Chr17g0336331 Lupinus albus HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Medtr1g072370 Medicago truncatula HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Medtr7g094680 Medicago truncatula HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Phvul.008G016100 Phaseolus vulgaris HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Pp3c13_22270 Physcomitrium patens HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Pp3c5_16280 Physcomitrium patens HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Psat3g065000 Pisum sativum HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Psat6g060600 Pisum sativum HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
Sp3g06530 Schrenkiella parvula HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 90.3
Sp6g02870 Schrenkiella parvula HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
TPR.G6177 Trifolium pratense HOM05D003232 ORTHO05D003584 2.0e-07 59.3 31 93.5
AagrBONN_evm.TU.Sc2ySwM_228.3099 Anthoceros agrestis HOM05D003232 ORTHO05D003584 2.7e-07 58.9 31 93.5
Pp3c9_610 Physcomitrium patens HOM05D003232 ORTHO05D003584 4.5e-07 58.2 68 54.4
Atru.chr12.1886 Acer truncatum HOM05D003232 ORTHO05D003584 5.9e-07 57.8 31 90.3
CAN.G1009.1 Capsicum annuum HOM05D003232 ORTHO05D003584 5.9e-07 57.8 31 87.1
Cc00_g04450 Coffea canephora HOM05D003232 ORTHO05D003584 7.7e-07 57.4 31 90.3
PSO541G4287 Papaver somniferum HOM05D003232 ORTHO05D003584 7.7e-07 57.4 31 90.3
PSO675G1536 Papaver somniferum HOM05D003232 ORTHO05D003584 7.7e-07 57.4 31 90.3
Peaxi162Scf00238g00082 Petunia axillaris HOM05D003232 ORTHO05D003584 7.7e-07 57.4 31 87.1
Sabra02G0044400 Salix brachista HOM05D003232 ORTHO05D003584 7.7e-07 57.4 30 93.3
Aa31LG5G2400 Aethionema arabicum HOM05D003232 ORTHO05D003584 1.0e-06 57.0 30 93.3
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
FvH4_2g23760 Fragaria vesca HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
FAN15G3011 Fragaria x ananassa HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
FAN20G0184 Fragaria x ananassa HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
FAN24G0719 Fragaria x ananassa HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
FAN27G2136 Fragaria x ananassa HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
MD03G1267200 Malus domestica HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
MD11G1287700 Malus domestica HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
Prupe.8G242900 Prunus persica HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
RcHm_v2.0_Chr6g0291251 Rosa chinensis HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
SalBow6G4986 Salvia bowleyana HOM05D003232 ORTHO05D003584 1.0e-06 57.0 31 90.3
SMO118G0358 Selaginella moellendorffii HOM05D003232 ORTHO05D003584 1.3e-06 56.6 31 90.3
Thecc.01G281700 Theobroma cacao HOM05D003232 ORTHO05D003584 3.8e-06 55.1 32 90.6
Sc03g0011720 Simmondsia chinensis HOM05D003232 ORTHO05D003584 6.6e-06 54.3 31 87.1
unitig_744.g24078 Utricularia gibba HOM05D003232 ORTHO05D003584 6.6e-06 54.3 31 83.9
Migut.M01594 Erythranthe guttata HOM05D003232 ORTHO05D003584 8.6e-06 53.9 31 83.9


User provided reference genes

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