Gene: Zm00001eb183380

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb183380
  • Transcript Identifier Zm00001eb183380_T001
  • Gene Type Coding gene
  • Location 4 : 132649954-132652166 : negative

Gene Family Information

  • ID HOM05D003232
  • #Genes/#Species 212/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb183380_T001
  • pid Zm00001eb183380_P001
  • uniprot A0A1D6Q3U3
  • uniprot B6TXH2
  • uniprot A0A1D6J8F5
  • uniprot B6T1K6
  • uniprot A0A1D6Q3U6
  • uniprot A0A3L6EYF1
  • uniprot B6UG22
  • uniprot A0A3L6GBU3
  • uniprot A0A3L6GBV4
  • uniprot A0A3L6FS09
  • uniprot B6SH29
  • entrez 100286216
  • refseq NP_001152576.1
  • refseq NM_001159104.1
  • V4_identifier Zm00001d050916

Descriptions

  • Description Zm00001e022838
  • Description Small nuclear ribonucleoprotein Sm D1
  • Description Small nuclear ribonucleoprotein family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT4G02840
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT3G07590
GO:0000387
IBA
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G02840
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G07590
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G07590
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G07590
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G07590
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:0000243
IBA
GOA Databasecommitment complex
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0034715
IBA
GOA DatabasepICln-Sm protein complex
GO:0034719
IBA
GOA DatabaseSMN-Sm protein complex
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034102 Small nuclear ribonucleoprotein D1
Mapman id Description
16.2.2.2 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D1