Gene: Solyc09g064660.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g064660.4
  • Transcript Identifier Solyc09g064660.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 58083478-58087210 : positive

Gene Family Information

  • ID HOM05D003232
  • #Genes/#Species 212/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g064660.4.1
  • uniprot A0A3Q7I508
  • gene_id Solyc09g064660

Descriptions

  • Description Small nuclear ribonucleoprotein Sm D1 (AHRD V3.3 *** A0A2U1M5R8_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT4G02840
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT3G07590
GO:0000387
IBA
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G02840
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G07590
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G07590
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G07590
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G07590
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:0000243
IBA
GOA Databasecommitment complex
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0034715
IBA
GOA DatabasepICln-Sm protein complex
GO:0034719
IBA
GOA DatabaseSMN-Sm protein complex
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR034102 Small nuclear ribonucleoprotein D1
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Mapman id Description
16.2.2.2 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D1