Gene: COL.COLO4_09117

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_09117
  • Transcript Identifier COL.rna7914
  • Gene Type Coding gene
  • Location AWUE01014120.1 : 75919-78665 : negative

Gene Family Information

  • ID HOM05D003232
  • #Genes/#Species 212/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna7914
  • GenBank OMP05040.1
  • id gene9089
  • gene_name COLO4_09117
  • uniprot A0A1R3KD71

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000387
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT3G07590
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT4G02840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G02840

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G07590
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G07590
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G07590
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G07590

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR010920 LSM domain superfamily
IPR034102 Small nuclear ribonucleoprotein D1
Mapman id Description
16.2.2.2 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D1