Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.0e-123 444.5 278 100.0
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-97 360.5 280 76.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.6e-78 296.2 297 69.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.8e-78 295.0 298 69.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.3e-74 283.1 290 69.0
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-73 280.8 289 66.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.3e-73 278.9 292 65.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.3e-73 278.9 277 68.2
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.4e-73 278.1 297 64.3
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.3e-72 277.3 286 70.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-72 277.3 153 91.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.6e-72 276.9 302 63.6
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.2e-72 276.6 284 70.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 3.7e-72 275.8 262 69.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.7e-72 275.8 291 65.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.3e-72 275.0 246 65.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.2e-72 274.6 299 62.5
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 8.2e-72 274.6 299 63.9
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.8e-71 273.5 154 90.9
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.1e-71 272.7 293 68.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.1e-71 272.3 154 89.6
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 4.1e-71 272.3 297 63.3
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 5.3e-71 271.9 289 70.9
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 6.9e-71 271.6 298 64.1
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.9e-71 271.6 287 70.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.0e-70 270.0 150 90.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.4e-70 269.2 154 89.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.4e-70 269.2 154 89.0
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.4e-70 269.2 197 73.1
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.5e-70 268.9 229 75.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 5.9e-70 268.5 288 66.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 7.7e-70 268.1 254 69.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.7e-69 266.9 199 73.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.7e-69 266.9 150 91.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.9e-69 266.2 300 64.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 3.8e-69 265.8 297 63.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.8e-69 265.8 150 89.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 5.0e-69 265.4 204 75.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 6.5e-69 265.0 192 75.0
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 6.5e-69 265.0 192 75.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 6.5e-69 265.0 221 72.9
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.5e-69 265.0 265 60.4
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 8.5e-69 264.6 156 86.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 8.5e-69 264.6 202 75.2
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.5e-69 264.6 200 72.5
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 8.5e-69 264.6 304 60.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.5e-69 264.6 199 75.9
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 8.5e-69 264.6 293 65.9
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.1e-68 264.2 251 70.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.1e-68 264.2 154 88.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.1e-68 264.2 190 74.7
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.4e-68 263.8 303 61.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.4e-68 263.8 303 61.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.9e-68 263.5 228 68.9
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.9e-68 263.5 153 86.3
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.5e-68 263.1 197 73.6
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.5e-68 263.1 190 74.2
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.5e-68 263.1 287 64.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.5e-68 263.1 295 67.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.2e-68 262.7 211 70.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 3.2e-68 262.7 151 86.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-68 262.7 151 87.4
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-68 262.3 216 69.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 4.2e-68 262.3 151 88.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 4.2e-68 262.3 216 69.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 4.2e-68 262.3 248 66.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.2e-68 262.3 178 77.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.2e-68 262.3 151 85.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.2e-68 262.3 178 77.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 5.5e-68 261.9 197 73.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.5e-68 261.9 286 69.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.2e-68 261.5 156 85.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.2e-68 261.5 151 88.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.2e-68 261.5 154 86.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.2e-67 260.8 201 71.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-67 260.0 216 68.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.1e-67 260.0 190 75.8
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.1e-67 260.0 196 75.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.1e-67 260.0 156 84.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.7e-67 259.6 212 71.7
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.7e-67 259.6 212 71.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.7e-67 259.6 156 85.3
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.7e-67 259.6 200 74.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.7e-67 259.6 289 63.3
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.6e-67 259.2 199 75.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.6e-67 259.2 154 84.4
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.0e-66 257.7 202 72.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.8e-66 256.9 152 86.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-66 256.5 226 67.7
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.3e-66 256.5 151 88.1
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.3e-66 256.5 139 92.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-66 256.5 151 86.1
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.0e-66 256.1 147 86.4
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 5.1e-66 255.4 252 66.7
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 8.8e-66 254.6 285 66.7
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.1e-65 254.2 145 89.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.5e-65 253.1 153 85.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.5e-65 253.1 201 70.1
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.3e-65 252.7 296 61.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.3e-65 252.7 204 71.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.7e-65 251.9 234 63.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.7e-65 251.9 191 72.3
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.4e-65 251.5 154 82.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 7.4e-65 251.5 251 67.3
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.7e-65 251.1 193 72.5
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.7e-65 251.1 193 72.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.2e-64 250.0 204 68.6
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.3e-64 248.4 153 82.4
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.3e-64 248.4 153 82.4
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.2e-64 248.1 286 58.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 151 82.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.1e-63 246.1 153 82.4
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.1e-63 245.7 201 71.1
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 4.1e-63 245.7 140 87.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.1e-63 244.6 291 60.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.2e-62 244.2 297 62.0
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-62 244.2 297 62.0
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.5e-62 243.8 154 82.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 2.0e-62 243.4 242 64.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.4e-62 242.7 244 63.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.9e-62 241.9 156 79.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.0e-61 241.1 151 84.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.2e-61 240.0 151 82.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.9e-61 239.6 153 78.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.9e-61 239.6 304 61.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.0e-61 238.8 149 82.6
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 8.5e-61 238.0 276 56.2
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.2e-60 235.7 287 59.6
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.0e-58 231.1 134 85.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.8e-58 230.3 233 62.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.9e-58 229.2 302 60.9
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.1e-57 227.6 150 78.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 9.7e-57 224.6 204 64.7
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.1e-55 221.1 130 86.2
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 5.0e-53 212.2 126 88.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.9e-52 210.3 287 55.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.9e-52 210.3 287 55.7
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.2e-52 209.5 196 59.7
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.7e-51 206.5 202 64.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.0e-50 203.0 120 84.2
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.9e-50 202.6 121 87.6
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-49 200.7 196 60.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.5e-46 189.5 145 64.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.2e-45 186.8 253 60.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.6e-43 180.6 150 62.7
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.0e-43 178.3 200 55.0
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-41 173.7 215 54.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 5.7e-41 172.2 123 71.5
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.3e-37 161.0 150 61.3
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 4.7e-35 152.5 94 79.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 5.2e-34 149.1 295 52.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 9.8e-33 144.8 200 51.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.8e-33 144.8 196 48.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.8e-33 144.8 196 48.0
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.2e-32 143.7 191 46.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-30 137.9 109 67.0
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-30 137.9 206 44.2
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 3.3e-28 129.8 136 53.7
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.5e-22 109.4 144 49.3
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-14 84.0 44 93.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.0e-14 84.0 147 49.7
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.3e-13 81.3 52 71.2
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.3e-13 80.5 69 63.8


User provided reference genes

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