Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 1.3e-148 529.6 263 100.0
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 3.1e-129 465.3 262 84.7
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 5.8e-128 461.1 260 84.6
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.9e-126 456.1 257 84.4
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 5.5e-126 454.5 258 84.5
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 5.1e-124 448.0 254 83.9
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 8.7e-124 447.2 295 75.6
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.2e-120 436.8 254 81.1
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 7.6e-120 434.1 260 83.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.2e-119 432.6 258 81.4
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 2.9e-119 432.2 258 79.8
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 3.8e-119 431.8 258 80.6
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 8.4e-119 430.6 260 83.5
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.1e-118 430.3 260 82.3
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.9e-118 429.5 260 83.1
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 3.2e-118 428.7 260 83.1
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 9.3e-118 427.2 260 81.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.7e-117 425.6 260 82.3
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.7e-117 425.6 260 81.9
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 3.5e-117 425.2 260 81.2
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.3e-116 423.3 260 81.5
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 3.0e-116 422.2 260 80.8
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 6.7e-116 421.0 260 81.2
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 6.7e-116 421.0 260 81.2
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 6.7e-116 421.0 260 80.8
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 8.7e-116 420.6 260 80.8
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.1e-115 420.2 260 80.8
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.5e-115 419.9 260 79.6
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 1.5e-115 419.9 260 81.5
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.5e-115 419.9 252 82.5
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 5.7e-115 417.9 260 80.8
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 5.7e-115 417.9 343 64.4
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 9.6e-115 417.2 252 82.1
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 9.6e-115 417.2 260 79.6
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 3.7e-114 415.2 268 78.7
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 4.8e-114 414.8 260 79.6
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 6.3e-114 414.5 260 76.9
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 6.3e-114 414.5 258 78.7
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 2.4e-113 412.5 285 74.7
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 2.4e-113 412.5 260 78.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 5.3e-113 411.4 260 79.6
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 6.9e-113 411.0 262 80.2
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 9.0e-113 410.6 260 79.2
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 9.0e-113 410.6 260 79.2
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.2e-112 410.2 262 79.0
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.2e-112 410.2 253 79.8
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.2e-112 410.2 260 79.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.5e-112 409.8 260 78.5
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.0e-112 409.5 252 80.2
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 4.5e-112 408.3 260 77.7
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 5.9e-112 407.9 260 78.5
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.0e-111 407.1 260 78.5
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.0e-111 407.1 253 77.9
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 1.7e-111 406.4 260 76.5
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.7e-111 406.4 260 74.6
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.7e-111 406.4 260 78.8
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 2.2e-111 406.0 260 76.2
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 3.8e-111 405.2 260 77.7
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 8.5e-111 404.1 253 78.3
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 8.5e-111 404.1 260 78.5
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.4e-110 403.3 260 76.9
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.4e-110 403.3 260 78.5
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 1.9e-110 402.9 260 76.9
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 4.2e-110 401.7 283 73.5
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 5.5e-110 401.4 277 73.6
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 5.5e-110 401.4 253 77.5
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.5e-110 401.4 253 77.5
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 7.2e-110 401.0 260 72.3
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 1.6e-109 399.8 253 79.1
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.1e-109 397.9 253 76.7
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.9e-108 395.2 252 79.0
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.1e-107 393.7 260 75.8
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.9e-107 392.9 259 71.8
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.3e-107 392.1 260 76.5
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 7.4e-107 391.0 261 75.9
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 9.7e-107 390.6 259 73.4
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.8e-106 389.0 222 86.0
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.8e-106 389.0 260 76.5
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 4.8e-106 388.3 255 72.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 4.8e-106 388.3 248 75.8
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.1e-105 387.1 222 85.1
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.8e-105 386.3 256 75.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 4.1e-105 385.2 260 73.1
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 9.1e-105 384.0 252 73.8
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 2.0e-104 382.9 260 75.0
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.0e-103 380.6 261 73.6
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.2e-103 379.4 259 71.4
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.8e-103 378.6 256 73.8
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 6.5e-103 377.9 258 72.1
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 7.2e-102 374.4 225 79.1
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 9.4e-102 374.0 260 70.4
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.9e-101 370.9 254 72.4
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 3.0e-100 369.0 252 70.6
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 3.3e-99 365.5 252 69.8
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.7e-98 363.2 314 62.4
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 2.7e-93 345.9 190 86.3
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.7e-90 335.5 256 65.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 4.2e-86 322.0 256 62.5
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.7e-82 310.1 258 57.0
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.2e-82 309.7 259 56.4
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 2.9e-79 299.3 258 54.3
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 8.5e-79 297.7 221 71.0
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 7.2e-78 294.7 183 82.5
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 4.8e-74 282.0 183 77.0
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.3e-71 273.1 165 79.4
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.5e-70 270.4 259 51.4
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 8.9e-68 261.2 156 84.0
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 7.8e-64 248.1 261 50.2
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 1.0e-63 247.7 200 54.0
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.9e-54 216.9 264 43.9
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.9e-50 203.0 114 81.6
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 4.9e-50 202.2 141 74.5
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.9e-49 200.3 113 84.1
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.0e-43 180.3 291 34.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 8.1e-37 158.3 101 80.2
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.7e-34 150.6 103 68.0
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 4.9e-34 149.1 99 75.8
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.1e-32 143.7 77 85.7
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 3.0e-31 139.8 260 40.0
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.9e-31 139.4 91 70.3
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.8e-29 133.3 77 79.2
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 6.2e-29 132.1 76 78.9
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 4.9e-18 95.9 132 47.0
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 2.1e-16 90.5 79 59.5
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.5e-14 84.3 107 45.8
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 3.3e-14 83.2 54 72.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.2e-09 66.6 36 72.2
Mapoly0071s0039 Marchantia polymorpha HOM05D016293 ORTHO05D018978 1.1e-06 58.2 85 36.5
BolC4t26141H Brassica oleracea HOM05D035675 ORTHO05D007652 2.5e-06 57.0 61 59.0
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 4.3e-06 56.2 197 27.9
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 5.6e-06 55.8 87 36.8


User provided reference genes

Program Settings