Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12866 Nelumbo nucifera HOM05D005550 ORTHO05D006679 3.3e-52 208.0 97 100.0
Nn6g33903 Nelumbo nucifera HOM05D005550 ORTHO05D006679 1.4e-18 96.3 51 84.3
PGR042G2104 Punica granatum HOM05D005550 ORTHO05D006679 7.6e-17 90.5 53 75.5
ClCG01G004190 Citrullus lanatus HOM05D005550 ORTHO05D006679 1.0e-16 90.1 53 75.5
MELO3C005519.2 Cucumis melo HOM05D005550 ORTHO05D006679 1.0e-16 90.1 53 75.5
Potri.001G156200 Populus trichocarpa HOM05D005550 ORTHO05D006679 1.3e-16 89.7 53 77.4
MD04G1062200 Malus domestica HOM05D005550 ORTHO05D006679 1.7e-16 89.4 53 73.6
Sc22g0000960 Simmondsia chinensis HOM05D005550 ORTHO05D006679 1.7e-16 89.4 53 75.5
Manes.01G082400 Manihot esculenta HOM05D005550 ORTHO05D006679 2.2e-16 89.0 53 77.4
Prupe.5G066100 Prunus persica HOM05D005550 ORTHO05D006679 2.2e-16 89.0 53 73.6
TAR375G0818 Trochodendron aralioides HOM05D005550 ORTHO05D006679 2.2e-16 89.0 53 75.5
Eucgr.E00409 Eucalyptus grandis HOM05D005550 ORTHO05D006679 2.9e-16 88.6 53 75.5
CiPaw.11G081300 Carya illinoinensis HOM05D005550 ORTHO05D006679 3.8e-16 88.2 53 73.6
Sed0012504 Sechium edule HOM05D005550 ORTHO05D006679 3.8e-16 88.2 53 75.5
TWI15G1253 Tripterygium wilfordii HOM05D005550 ORTHO05D006679 3.8e-16 88.2 53 75.5
HanXRQChr06g0164431 Helianthus annuus HOM05D005550 ORTHO05D006679 6.5e-16 87.4 54 72.2
PSO063G2362 Papaver somniferum HOM05D005550 ORTHO05D006679 6.5e-16 87.4 53 71.7
THA.LOC104812808 Tarenaya hassleriana HOM05D005550 ORTHO05D006679 6.5e-16 87.4 51 76.5
Atru.chr9.1288 Acer truncatum HOM05D005550 ORTHO05D006679 8.4e-16 87.0 53 73.6
CsaV3_5G004390 Cucumis sativus L. HOM05D005550 ORTHO05D006679 8.4e-16 87.0 53 73.6
DCAR_006840 Daucus carota HOM05D005550 ORTHO05D006679 8.4e-16 87.0 53 73.6
Aqoxy7G00819 Aquilegia oxysepala HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 71.7
CAN.G1227.20 Capsicum annuum HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
MBI04_g09523_MAGBIO Magnolia biondii HOM05D005550 ORTHO05D006679 1.1e-15 86.7 51 76.5
QL12p011636 Quercus lobata HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
Solyc08g007330.3 Solanum lycopersicum HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
Sopen08g003270 Solanum pennellii HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
PGSC0003DMG400012503 Solanum tuberosum HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
Thecc.03G248800 Theobroma cacao HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 73.6
GSVIVG01004727001 Vitis vinifera HOM05D005550 ORTHO05D006679 1.1e-15 86.7 53 71.7
Gohir.A12G215932 Gossypium hirsutum HOM05D005550 ORTHO05D006679 1.4e-15 86.3 53 71.7
PSO782G0795 Papaver somniferum HOM05D005550 ORTHO05D006679 1.4e-15 86.3 53 71.7
Actinidia02146 Actinidia chinensis HOM05D005550 ORTHO05D006679 1.9e-15 85.9 53 73.6
Duzib068G0290 Durio zibethinus HOM05D005550 ORTHO05D006679 1.9e-15 85.9 53 71.7
Hma1.2p1_1136F.1_g260510 Hydrangea macrophylla HOM05D005550 ORTHO05D006679 2.5e-15 85.5 53 73.6
Hma1.2p1_1136F.1_g260520 Hydrangea macrophylla HOM05D005550 ORTHO05D006679 2.5e-15 85.5 53 73.6
Ciclev10018920m.g Citrus clementina HOM05D005550 ORTHO05D006679 4.2e-15 84.7 53 69.8
Migut.A01122 Erythranthe guttata HOM05D005550 ORTHO05D006679 4.2e-15 84.7 53 71.7
Rhsim11G0009700 Rhododendron simsii HOM05D005550 ORTHO05D006679 5.5e-15 84.3 53 71.7
FAN08G0299 Fragaria x ananassa HOM05D005550 ORTHO05D006679 7.1e-15 84.0 55 69.1
SGA_v2.0_scaffold104G30171 Striga asiatica HOM05D005550 ORTHO05D006679 7.1e-15 84.0 53 71.7
EL10Ac5g12365 Beta vulgaris HOM05D005550 ORTHO05D006679 9.3e-15 83.6 53 69.8
Lj2A221T32 Lonicera japonica HOM05D005550 ORTHO05D006679 9.3e-15 83.6 53 71.7
Aa31LG6G120 Aethionema arabicum HOM05D005550 ORTHO05D006679 1.2e-14 83.2 51 70.6
AL7G37330 Arabidopsis lyrata HOM05D005550 ORTHO05D006679 1.2e-14 83.2 51 70.6
AT4G17380 Arabidopsis thaliana HOM05D005550 ORTHO05D006679 1.2e-14 83.2 51 70.6
Carub.0007s2403 Capsella rubella HOM05D005550 ORTHO05D006679 1.2e-14 83.2 51 70.6
Cc08_g12230 Coffea canephora HOM05D005550 ORTHO05D006679 1.2e-14 83.2 54 72.2
Thhalv10024454m.g Eutrema salsugineum HOM05D005550 ORTHO05D006679 1.2e-14 83.2 51 70.6
Gohir.D12G218532 Gossypium hirsutum HOM05D005550 ORTHO05D006679 1.2e-14 83.2 53 69.8
Gorai.008G234100 Gossypium raimondii HOM05D005550 ORTHO05D006679 1.2e-14 83.2 53 69.8
Nitab4.5_0000712g0130 Nicotiana tabacum HOM05D005550 ORTHO05D006679 1.2e-14 83.2 53 69.8
ECA248G1640 Erigeron canadensis HOM05D005550 ORTHO05D006679 1.6e-14 82.8 54 68.5
CANSAT21G2208 Cannabis sativa HOM05D005550 ORTHO05D006679 2.1e-14 82.4 53 67.9
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 2.7e-14 82.0 53 67.9
RcHm_v2.0_Chr7g0203731 Rosa chinensis HOM05D005550 ORTHO05D006679 2.7e-14 82.0 53 69.8
vmacro00189 Vaccinium macrocarpon HOM05D005550 ORTHO05D006679 3.5e-14 81.6 53 69.8
FvH4_5g19230 Fragaria vesca HOM05D005550 ORTHO05D006679 4.6e-14 81.3 53 69.8
FAN04G3230 Fragaria x ananassa HOM05D005550 ORTHO05D006679 4.6e-14 81.3 53 69.8
FAN18G0162 Fragaria x ananassa HOM05D005550 ORTHO05D006679 4.6e-14 81.3 53 69.8
A08p13130 Brassica napus HOM05D005550 ORTHO05D006679 6.0e-14 80.9 51 68.6
BraA08t33293Z Brassica rapa HOM05D005550 ORTHO05D006679 6.0e-14 80.9 51 68.6
CSS0014382 Camellia sinensis var. sinensis HOM05D005550 ORTHO05D006679 6.0e-14 80.9 53 67.9
CARHR223990 Cardamine hirsuta HOM05D005550 ORTHO05D006679 6.0e-14 80.9 51 68.6
Sabra01G0134700 Salix brachista HOM05D005550 ORTHO05D006679 6.0e-14 80.9 48 75.0
ATR0057G027 Amborella trichopoda HOM05D005550 ORTHO05D006679 1.0e-13 80.1 51 66.7
BcaB04g18410 Brassica carinata HOM05D005550 ORTHO05D006679 1.0e-13 80.1 51 68.6
SalBow6G3355 Salvia bowleyana HOM05D005550 ORTHO05D006679 1.3e-13 79.7 53 64.2
Lsat_1_v5_gn_3_1200 Lactuca sativa HOM05D005550 ORTHO05D006679 1.8e-13 79.3 56 67.9
MSTRG.12114 Avicennia marina HOM05D005550 ORTHO05D006679 3.0e-13 78.6 48 70.8
AUR62019968 Chenopodium quinoa HOM05D005550 ORTHO05D006679 5.1e-13 77.8 48 70.8
BcaC07g38064 Brassica carinata HOM05D005550 ORTHO05D006679 8.7e-13 77.0 51 66.7
Peaxi162Scf00102g01071 Petunia axillaris HOM05D005550 ORTHO05D006679 8.7e-13 77.0 48 72.9
Zm00001eb105070 Zea mays HOM05D005550 ORTHO05D006679 8.7e-13 77.0 51 66.7
Nitab4.5_0002225g0010 Nicotiana tabacum HOM05D005550 ORTHO05D006679 1.1e-12 76.6 48 68.8
BolC8t48465H Brassica oleracea HOM05D005550 ORTHO05D006679 2.5e-12 75.5 51 64.7
Lalb_Chr16g0379511 Lupinus albus HOM05D005550 ORTHO05D006679 2.5e-12 75.5 52 63.5
arahy.Tifrunner.gnm1.ann1.7NLF36 Arachis hypogaea HOM05D005550 ORTHO05D006679 3.3e-12 75.1 53 62.3
arahy.Tifrunner.gnm1.ann1.XE7N8H Arachis hypogaea HOM05D005550 ORTHO05D006679 3.3e-12 75.1 53 62.3
AUR62007105 Chenopodium quinoa HOM05D005550 ORTHO05D006679 4.3e-12 74.7 48 68.8
Ca_24591_v3 Cicer arietinum L. HOM05D005550 ORTHO05D006679 4.3e-12 74.7 54 61.1
Lj2g0021636 Lotus japonicus HOM05D005550 ORTHO05D006679 5.7e-12 74.3 53 64.2
Medtr5g012900 Medicago truncatula HOM05D005550 ORTHO05D006679 5.7e-12 74.3 53 62.3
TPR.G18117 Trifolium pratense HOM05D005550 ORTHO05D006679 7.4e-12 73.9 53 62.3
VMungo1215G0570 Vigna mungo HOM05D005550 ORTHO05D006679 9.7e-12 73.6 53 62.3
Glyma.11G034600 Glycine max HOM05D005550 ORTHO05D006679 1.3e-11 73.2 53 60.4
Psat2g176640 Pisum sativum HOM05D005550 ORTHO05D006679 4.8e-11 71.2 53 56.6
HPP92_025386 Vanilla planifolia HOM05D005550 ORTHO05D006679 6.3e-11 70.9 51 62.7
SEGI_10856 Sequoiadendron giganteum HOM05D005550 ORTHO05D006679 1.4e-10 69.7 53 66.0
Phvul.002G057100 Phaseolus vulgaris HOM05D005550 ORTHO05D006679 2.6e-09 65.5 48 60.4
AagrBONN_evm.TU.Sc2ySwM_344.184 Anthoceros agrestis HOM05D005550 ORTHO05D006679 2.9e-08 62.0 49 61.2
FAN13G1102 Fragaria x ananassa HOM05D005550 ORTHO05D006679 3.8e-08 61.6 44 63.6
Pp3c2_940 Physcomitrium patens HOM05D005550 ORTHO05D006679 8.5e-08 60.5 51 54.9


User provided reference genes

Program Settings