Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.9e-175 619.0 300 100.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.3e-96 356.3 240 71.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.7e-88 328.2 238 64.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.7e-88 328.2 243 65.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.4e-87 325.5 236 65.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 9.7e-87 324.3 240 65.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.3e-86 323.9 238 64.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.7e-86 323.6 235 63.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.2e-86 323.2 238 64.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-85 320.5 239 64.4
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-85 320.5 239 64.4
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.1e-85 319.3 238 64.3
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.1e-85 319.3 237 64.6
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.1e-85 318.9 237 65.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 7.0e-85 318.2 243 61.7
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 9.1e-85 317.8 236 61.4
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-84 317.4 238 63.9
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.6e-84 317.0 238 64.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.6e-84 316.2 237 64.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.5e-84 315.5 236 64.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 5.9e-84 315.1 251 60.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 7.7e-84 314.7 235 64.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.3e-83 313.9 237 63.3
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-83 313.5 237 63.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 2.2e-83 313.2 243 61.3
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.2e-83 313.2 236 64.0
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.5e-82 309.7 238 61.8
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.2e-82 309.3 237 62.9
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.5e-82 308.5 238 65.1
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.2e-81 307.4 244 61.9
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.2e-81 307.4 235 63.0
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-81 306.2 239 63.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.7e-81 306.2 242 61.6
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.7e-81 305.4 237 61.2
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 8.0e-81 304.7 243 63.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.0e-80 302.4 243 63.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.0e-79 300.1 239 59.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.3e-79 299.3 235 58.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.7e-78 297.0 238 60.1
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.2e-78 296.6 238 60.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.7e-78 295.8 236 60.6
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.8e-78 295.4 237 61.6
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.1e-77 294.3 235 60.0
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.4e-77 293.9 235 60.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.8e-77 293.5 239 60.7
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-77 293.5 236 59.3
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-77 293.5 236 59.3
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.1e-77 292.7 236 59.3
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.2e-76 290.8 235 62.1
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.6e-76 290.4 239 57.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-76 289.3 235 59.6
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 7.7e-76 288.1 242 60.3
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.0e-75 287.7 248 59.3
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.3e-75 287.3 237 60.3
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-75 286.6 236 58.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.9e-75 286.2 238 58.8
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.8e-75 285.8 249 57.0
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 5.0e-75 285.4 241 56.8
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.0e-75 285.4 238 60.5
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 6.5e-75 285.0 235 59.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.5e-75 285.0 238 60.1
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.5e-75 285.0 243 56.8
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 8.5e-75 284.6 242 58.7
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-74 283.9 241 60.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-74 283.5 238 60.1
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.9e-74 283.5 247 56.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-74 282.7 238 59.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 3.2e-74 282.7 238 58.8
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.2e-74 281.6 245 56.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 7.2e-74 281.6 249 55.8
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 9.4e-74 281.2 248 58.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.2e-73 280.8 243 58.4
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.2e-73 280.8 243 58.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.2e-73 280.8 242 58.7
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-73 280.4 245 55.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.1e-73 280.0 238 58.4
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.1e-73 280.0 247 58.7
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.6e-73 279.3 238 59.2
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.6e-73 279.3 251 56.6
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 6.1e-73 278.5 236 57.2
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.0e-73 278.1 239 58.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.4e-72 277.3 238 58.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-72 276.6 244 54.9
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-72 276.6 244 54.9
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.0e-72 276.2 238 58.8
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 5.2e-72 275.4 242 57.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 8.8e-72 274.6 233 55.4
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.6e-71 273.1 240 57.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.4e-71 272.7 244 57.4
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.4e-71 272.3 247 53.4
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.7e-71 271.9 240 55.0
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 5.7e-71 271.9 219 61.2
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.5e-71 271.6 214 61.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.2e-70 270.0 236 53.8
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.8e-70 269.6 237 57.8
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.7e-70 269.2 250 56.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.7e-70 269.2 250 56.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 4.8e-70 268.9 236 58.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.8e-70 268.9 249 55.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 4.8e-70 268.9 237 55.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.8e-70 268.9 245 55.9
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.8e-69 266.9 241 56.8
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.1e-69 266.2 240 54.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.1e-69 265.8 242 53.7
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.1e-69 264.6 244 53.7
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.2e-68 264.2 238 55.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-68 264.2 245 54.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.0e-68 263.5 242 57.0
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.0e-67 261.2 242 52.9
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.9e-67 259.6 238 53.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.8e-67 259.2 239 52.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.0e-67 258.8 245 52.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.5e-67 258.1 238 52.9
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 8.5e-67 258.1 241 54.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.5e-67 258.1 246 52.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 8.5e-67 258.1 245 52.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 8.5e-67 258.1 231 54.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.9e-66 256.9 242 52.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.9e-66 256.9 229 53.7
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.2e-66 255.8 236 52.5
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.2e-66 255.8 236 52.5
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.5e-66 255.4 236 53.4
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.5e-66 255.4 238 51.7
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.2e-66 255.0 237 56.5
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-65 253.8 203 59.1
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.1e-65 253.4 245 52.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.7e-65 252.3 237 56.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.0e-64 251.1 243 53.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.8e-64 250.4 242 51.2
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-64 250.4 242 51.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.0e-64 249.2 245 52.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 8.8e-64 248.1 235 52.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 8.8e-64 248.1 250 52.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 8.8e-64 248.1 251 53.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.4e-63 245.7 233 51.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 4.4e-63 245.7 225 55.6
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.3e-62 244.2 218 55.0
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-62 244.2 203 57.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.6e-60 237.3 238 51.3
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 5.9e-60 235.3 238 52.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.5e-58 229.9 244 50.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 2.5e-58 229.9 266 48.1
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 9.5e-58 228.0 232 49.1
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 9.5e-58 228.0 236 50.8
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.8e-57 226.5 225 51.6
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.0e-56 222.6 166 63.9
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 5.2e-56 222.2 212 52.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.4e-55 219.5 195 55.4
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-53 214.5 236 48.7
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.4e-53 214.2 224 51.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 5.9e-52 208.8 242 44.6
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 7.8e-52 208.4 158 62.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-50 204.5 185 56.2
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.6e-50 202.2 163 57.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 8.9e-48 194.9 243 45.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 3.7e-46 189.5 163 52.1
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.1e-45 186.0 159 55.3
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.4e-45 185.7 259 39.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.4e-45 185.7 262 39.7
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.0e-45 185.3 245 44.5
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 4.6e-44 182.6 259 39.4
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.5e-42 177.6 200 47.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.9e-37 160.6 127 59.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.8e-32 142.1 192 41.7
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.3e-30 137.9 115 61.7
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.6e-28 131.0 118 58.5
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.5e-28 129.8 90 68.9
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.3e-27 127.1 128 50.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.3e-27 127.1 149 45.6
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-25 121.3 107 53.3
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 3.1e-24 116.7 122 47.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.4e-22 109.0 95 55.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.9e-21 107.5 166 36.7
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.3e-19 100.5 72 66.7
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 7.3e-18 95.5 164 31.1
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 9.6e-18 95.1 189 31.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 9.6e-18 95.1 78 47.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-17 94.7 96 46.9
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.8e-16 90.9 89 49.4
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.8e-16 90.9 133 42.1
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.2e-13 79.7 80 46.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.4e-08 63.9 169 29.0
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 5.3e-08 62.8 61 47.5


User provided reference genes

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