Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.3e-114 416.4 208 100.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 2.5e-81 305.8 162 94.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.3e-79 299.3 167 92.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.0e-78 296.2 167 92.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 7.5e-78 294.3 163 92.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 9.7e-78 293.9 167 92.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.2e-77 292.7 166 89.2
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.8e-77 292.4 165 90.3
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 6.3e-77 291.2 167 89.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 8.2e-77 290.8 167 88.6
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.4e-76 290.0 164 89.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.8e-76 289.7 167 88.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.4e-76 289.3 163 90.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.1e-76 288.9 163 92.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 9.1e-76 287.3 162 92.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.6e-75 286.6 167 88.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 3.5e-75 285.4 156 91.7
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-75 285.0 167 89.2
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-75 285.0 167 89.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.3e-74 283.5 155 91.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.7e-74 283.1 164 89.6
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.7e-74 283.1 165 89.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-74 283.1 176 84.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.7e-74 283.1 166 87.3
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.7e-74 283.1 168 88.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 3.8e-74 282.0 167 88.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.8e-74 282.0 168 86.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.8e-74 282.0 166 86.7
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.0e-74 281.6 153 93.5
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.0e-74 281.6 165 87.9
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 5.0e-74 281.6 151 94.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 6.5e-74 281.2 167 86.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 6.5e-74 281.2 153 92.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.5e-74 280.8 167 89.2
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 8.5e-74 280.8 167 86.8
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.5e-74 280.8 164 89.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 8.5e-74 280.8 161 88.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.1e-73 280.4 165 88.5
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-73 280.4 166 86.1
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.5e-73 279.3 164 87.2
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.5e-73 279.3 163 89.0
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.5e-73 279.3 166 86.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.2e-73 278.9 165 87.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 3.2e-73 278.9 167 83.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.2e-73 278.5 163 90.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 7.2e-73 277.7 166 87.3
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 7.2e-73 277.7 166 86.1
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.1e-72 276.2 168 86.9
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.0e-72 274.2 152 92.8
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.0e-72 274.2 168 85.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 8.0e-72 274.2 152 92.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.0e-71 273.9 163 87.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.0e-71 273.9 166 88.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-71 273.5 177 83.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-71 273.5 171 83.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.4e-71 273.5 151 92.7
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.8e-71 273.1 176 83.0
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-71 273.1 181 80.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.8e-71 273.1 181 80.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.8e-71 273.1 181 80.1
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.8e-71 273.1 166 86.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.8e-71 273.1 166 84.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-71 272.7 167 86.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.3e-71 272.7 171 83.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.0e-71 272.3 152 90.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.0e-71 272.3 152 90.8
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 4.0e-71 271.9 171 83.6
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.2e-71 271.6 166 86.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.8e-71 271.2 150 92.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.2e-70 270.4 151 90.7
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-70 270.4 182 79.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.2e-70 270.4 147 91.8
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.5e-70 270.0 151 90.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.0e-70 269.6 150 92.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.0e-70 269.6 166 86.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.6e-70 269.2 152 90.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.4e-70 268.9 159 86.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-70 268.9 159 86.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.4e-70 268.5 165 83.6
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.4e-70 268.5 151 90.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.7e-70 268.1 162 87.0
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.7e-70 268.1 162 87.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 7.5e-70 267.7 167 82.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 7.5e-70 267.7 163 84.0
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-69 266.9 152 91.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.7e-69 266.5 162 84.6
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.7e-69 266.5 150 90.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.7e-69 266.5 163 85.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.2e-69 266.2 166 83.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.2e-69 266.2 162 84.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 2.8e-69 265.8 166 84.3
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.7e-69 265.4 165 84.2
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 4.8e-69 265.0 209 70.8
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.3e-69 264.6 167 81.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 8.3e-69 264.2 152 90.8
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 8.3e-69 264.2 152 90.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.3e-69 264.2 172 82.6
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.8e-68 263.1 167 82.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.4e-68 262.7 165 84.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.1e-68 261.9 165 82.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 7.0e-68 261.2 169 82.8
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 7.0e-68 261.2 165 81.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.1e-68 260.8 167 81.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-67 260.4 147 91.8
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.2e-67 260.4 145 93.1
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.5e-67 258.5 153 85.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.5e-67 258.5 153 85.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 5.9e-67 258.1 165 81.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.7e-66 256.5 147 90.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 5.0e-66 255.0 172 79.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.0e-66 255.0 172 79.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.6e-66 254.6 151 86.8
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-66 254.6 172 79.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-66 254.6 172 79.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.3e-65 252.3 152 84.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 7.2e-65 251.1 165 78.8
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.1e-64 249.6 152 86.2
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.6e-64 248.8 177 74.6
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.7e-64 248.4 153 83.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.7e-64 248.4 153 83.7
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.0e-63 247.3 168 78.0
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-63 246.9 153 82.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.0e-63 245.4 157 84.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 8.9e-63 244.2 156 83.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-62 243.8 140 88.6
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 7.5e-62 241.1 148 83.8
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.3e-61 240.4 149 85.2
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.7e-61 240.0 143 85.3
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.1e-60 235.7 151 83.4
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 5.4e-60 235.0 165 75.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.5e-59 232.3 141 84.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 7.8e-59 231.1 159 78.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.0e-58 230.7 130 91.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.3e-58 229.6 162 76.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.3e-58 229.6 162 76.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 6.6e-58 228.0 172 70.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-55 220.3 122 91.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.1e-55 219.2 135 83.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.0e-54 216.5 145 79.3
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.2e-52 207.6 184 65.2
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.0e-51 206.5 165 70.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.0e-50 202.6 132 81.8
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.6e-50 201.4 132 81.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.6e-49 198.4 159 64.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-47 193.4 166 64.5
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.0e-46 189.9 165 63.0
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.7e-45 186.8 109 88.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.9e-45 186.0 151 66.2
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 9.2e-44 181.0 123 75.6
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 8.3e-37 157.9 94 86.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.1e-35 153.3 94 83.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-34 150.2 168 54.2
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-34 150.2 168 54.2
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.3e-34 149.8 168 54.2
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-33 147.5 109 73.4
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-33 147.1 165 54.5
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 3.5e-27 125.9 137 54.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-21 107.5 139 48.2
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.8e-19 98.2 53 88.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-15 86.7 63 73.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.6e-14 83.2 54 81.5
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.6e-14 81.6 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.8e-13 79.3 50 80.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.1e-07 61.2 67 55.2
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.5e-06 55.8 45 66.7


User provided reference genes

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