Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06512 Nelumbo nucifera HOM05D001185 ORTHO05D036467 3.1e-20 100.9 53 100.0
Nn7g37355 Nelumbo nucifera HOM05D001185 ORTHO05D036467 4.9e-18 93.6 53 92.5
Nn1g00896 Nelumbo nucifera HOM05D001185 ORTHO05D003777 4.2e-17 90.5 53 90.6
Nn5g28798 Nelumbo nucifera HOM05D001185 ORTHO05D003777 1.9e-14 81.6 47 89.4
FvH4_5g27840 Fragaria vesca HOM05D001185 ORTHO05D003777 3.7e-13 77.4 47 83.0
FAN04G1893 Fragaria x ananassa HOM05D001185 ORTHO05D003777 3.7e-13 77.4 47 83.0
FAN08G1862 Fragaria x ananassa HOM05D001185 ORTHO05D003777 3.7e-13 77.4 47 83.0
FAN18G0103 Fragaria x ananassa HOM05D001185 ORTHO05D003777 3.7e-13 77.4 47 83.0
Gohir.A05G392400 Gossypium hirsutum HOM05D001185 ORTHO05D003777 4.8e-13 77.0 47 83.0
RcHm_v2.0_Chr7g0219741 Rosa chinensis HOM05D001185 ORTHO05D003777 4.8e-13 77.0 47 83.0
CiPaw.04G088700 Carya illinoinensis HOM05D001185 ORTHO05D003777 6.2e-13 76.6 47 80.9
CDE06G2150 Ceratophyllum demersum HOM05D001185 ORTHO05D003777 6.2e-13 76.6 47 83.0
RcHm_v2.0_Chr2g0118191 Rosa chinensis HOM05D001185 ORTHO05D003777 6.2e-13 76.6 47 80.9
RcHm_v2.0_Chr2g0118231 Rosa chinensis HOM05D001185 ORTHO05D003777 6.2e-13 76.6 47 80.9
FvH4_1g23340 Fragaria vesca HOM05D001185 ORTHO05D003777 8.1e-13 76.3 47 80.9
FAN19G2345 Fragaria x ananassa HOM05D001185 ORTHO05D003777 8.1e-13 76.3 47 80.9
PGR119G0924 Punica granatum HOM05D001185 ORTHO05D003777 8.1e-13 76.3 47 80.9
CiPaw.03G131400 Carya illinoinensis HOM05D001185 ORTHO05D003777 1.1e-12 75.9 47 80.9
Gohir.D04G024700 Gossypium hirsutum HOM05D001185 ORTHO05D003777 1.1e-12 75.9 47 80.9
Gorai.012G027200 Gossypium raimondii HOM05D001185 ORTHO05D003777 1.1e-12 75.9 47 80.9
CANSAT01G1300 Cannabis sativa HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 78.7
Haze_25086 Corylus avellana HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
Gohir.A08G225600 Gossypium hirsutum HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
Gohir.D08G246000 Gossypium hirsutum HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
Gorai.004G262500 Gossypium raimondii HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
Prupe.2G117100 Prunus persica HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
GSVIVG01022276001 Vitis vinifera HOM05D001185 ORTHO05D003777 1.4e-12 75.5 47 80.9
CDE02G4573 Ceratophyllum demersum HOM05D001185 ORTHO05D003777 1.8e-12 75.1 47 80.9
Duzib128G1392 Durio zibethinus HOM05D001185 ORTHO05D003777 1.8e-12 75.1 47 80.9
Ciclev10025611m.g Citrus clementina HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 80.9
Manes.13G081000 Manihot esculenta HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 78.7
Nn1g06030 Nelumbo nucifera HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 80.9
Potri.007G076900 Populus trichocarpa HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 78.7
QL06p031307 Quercus lobata HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 78.7
Thecc.05G196500 Theobroma cacao HOM05D001185 ORTHO05D003777 2.4e-12 74.7 47 80.9
Duzib177G1116 Durio zibethinus HOM05D001185 ORTHO05D003777 3.1e-12 74.3 47 80.9
Prupe.2G119800 Prunus persica HOM05D001185 ORTHO05D003777 3.1e-12 74.3 47 78.7
vmacro12869 Vaccinium macrocarpon HOM05D001185 ORTHO05D003777 3.1e-12 74.3 47 76.6
Ah.16g107210 Amaranthus hybridus HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 74.5
EL10Ac9g20711 Beta vulgaris HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 74.5
ClCG02G000890 Citrullus lanatus HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 83.0
COL.COLO4_05183 Corchorus olitorius HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 80.9
MELO3C020972.2 Cucumis melo HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 83.0
FAN23G1006 Fragaria x ananassa HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 78.7
Sabra07G0064800 Salix brachista HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 76.6
Sed0017410 Sechium edule HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 83.0
Sed0021912 Sechium edule HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 83.0
SGA_v2.0_scaffold51G18767 Striga asiatica HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 78.7
TAR376G1223 Trochodendron aralioides HOM05D001185 ORTHO05D003777 4.0e-12 73.9 47 76.6
Actinidia12222 Actinidia chinensis HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 78.7
Aqoxy6G00403 Aquilegia oxysepala HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 78.7
MSTRG.23295 Avicennia marina HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 78.7
MSTRG.23296 Avicennia marina HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 78.7
Manes.12G145900 Manihot esculenta HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 76.6
PSO170G5175 Papaver somniferum HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 76.6
PSO700G0370 Papaver somniferum HOM05D001185 ORTHO05D003777 5.3e-12 73.6 47 76.6
Atru.chr4.692 Acer truncatum HOM05D001185 ORTHO05D003777 6.9e-12 73.2 47 78.7
Actinidia09839 Actinidia chinensis HOM05D001185 ORTHO05D003777 6.9e-12 73.2 47 78.7
CSS0026681 Camellia sinensis var. sinensis HOM05D001185 ORTHO05D003777 6.9e-12 73.2 47 76.6
Sc01g0006190 Simmondsia chinensis HOM05D001185 ORTHO05D003777 6.9e-12 73.2 47 78.7
CSS0049418 Camellia sinensis var. sinensis HOM05D001185 ORTHO05D003777 9.0e-12 72.8 47 74.5
Hund03419 Selenicereus undatus HOM05D001185 ORTHO05D014142 9.0e-12 72.8 47 76.6
SGA_v2.0_scaffold2G01264 Striga asiatica HOM05D001185 ORTHO05D003777 9.0e-12 72.8 47 78.7
TAR628G0368 Trochodendron aralioides HOM05D001185 ORTHO05D003777 9.0e-12 72.8 47 76.6
AUR62005017 Chenopodium quinoa HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 72.3
AUR62038363 Chenopodium quinoa HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 72.3
AUR62040966 Chenopodium quinoa HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 72.3
Lj2A569G64 Lonicera japonica HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 74.5
MBI18_g28676_MAGBIO Magnolia biondii HOM05D001185 ORTHO05D014142 1.2e-11 72.4 47 78.7
MD02G1223100 Malus domestica HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 78.7
MD07G1091700 Malus domestica HOM05D001185 ORTHO05D003777 1.2e-11 72.4 47 78.7
Oeu028349.2 Olea europaea HOM05D001185 ORTHO05D003777 1.2e-11 72.4 51 70.6
BcaB08g37173 Brassica carinata HOM05D001185 ORTHO05D003777 1.5e-11 72.0 48 75.0
Dinv04462 Davidia involucrata HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 72.3
Duzib106G0188 Durio zibethinus HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 76.6
Migut.L00054 Erythranthe guttata HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 76.6
Lsat_1_v5_gn_7_53021 Lactuca sativa HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 74.5
Sabra05G0071900 Salix brachista HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 74.5
SalBow6G6156 Salvia bowleyana HOM05D001185 ORTHO05D003777 1.5e-11 72.0 47 76.6
Thhalv10004227m.g Eutrema salsugineum HOM05D001185 ORTHO05D003777 2.0e-11 71.6 47 74.5
FAN28G2374 Fragaria x ananassa HOM05D001185 ORTHO05D003777 2.0e-11 71.6 47 76.6
Nitab4.5_0010260g0020 Nicotiana tabacum HOM05D001185 ORTHO05D003777 2.0e-11 71.6 47 74.5
Os03g0851300 Oryza sativa ssp. japonica HOM05D001185 ORTHO05D003777 2.0e-11 71.6 46 80.4
PGSC0003DMG401023644 Solanum tuberosum HOM05D001185 ORTHO05D003777 2.0e-11 71.6 47 74.5
AL8G42220 Arabidopsis lyrata HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 76.6
MSTRG.2518 Avicennia marina HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 74.5
Cpa.g.sc72.48 Carica papaya HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 76.6
AUR62000951 Chenopodium quinoa HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 70.2
ECA240G1489 Erigeron canadensis HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 72.3
HanXRQChr03g0066271 Helianthus annuus HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 72.3
HanXRQChr05g0138241 Helianthus annuus HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 72.3
Solyc04g012040.3 Solanum lycopersicum HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 74.5
Sopen04g006160 Solanum pennellii HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 74.5
TWI79G1157 Tripterygium wilfordii HOM05D001185 ORTHO05D003777 2.6e-11 71.2 47 76.6
arahy.Tifrunner.gnm1.ann1.GJ501R Arachis hypogaea HOM05D001185 ORTHO05D003777 3.4e-11 70.9 45 80.0
arahy.Tifrunner.gnm1.ann1.ZE2GKX Arachis hypogaea HOM05D001185 ORTHO05D003777 3.4e-11 70.9 45 80.0
Carub.0008s2557 Capsella rubella HOM05D001185 ORTHO05D003777 3.4e-11 70.9 47 74.5
CARHR278750 Cardamine hirsuta HOM05D001185 ORTHO05D003777 3.4e-11 70.9 47 74.5
Thhalv10013557m.g Eutrema salsugineum HOM05D001185 ORTHO05D003777 3.4e-11 70.9 47 74.5
HanXRQChr10g0284121 Helianthus annuus HOM05D001185 ORTHO05D003777 3.4e-11 70.9 47 70.2
SalBow5G0567 Salvia bowleyana HOM05D001185 ORTHO05D003777 3.4e-11 70.9 47 74.5
AagrBONN_evm.TU.Sc2ySwM_368.782 Anthoceros agrestis HOM05D001185 ORTHO05D003777 4.5e-11 70.5 44 77.3
BcaB05g21522 Brassica carinata HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
A02p00220 Brassica napus HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
A10p27570 Brassica napus HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
C02p04140 Brassica napus HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
BolC2t06376H Brassica oleracea HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
BraA10t44809Z Brassica rapa HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
CARHR203440 Cardamine hirsuta HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 74.5
Peaxi162Scf00025g10312 Petunia axillaris HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 72.3
Potri.005G087100 Populus trichocarpa HOM05D001185 ORTHO05D003777 4.5e-11 70.5 47 70.2
unitig_736.g22631 Utricularia gibba HOM05D001185 ORTHO05D003777 4.5e-11 70.5 46 78.3
Aa31LG3G17220 Aethionema arabicum HOM05D001185 ORTHO05D003777 5.8e-11 70.1 47 74.5
TWI31G0616 Tripterygium wilfordii HOM05D001185 ORTHO05D003777 5.8e-11 70.1 47 74.5
VMungo0251G0756 Vigna mungo HOM05D001185 ORTHO05D003777 5.8e-11 70.1 45 80.0
Zm00001eb210720 Zea mays HOM05D001185 ORTHO05D003777 5.8e-11 70.1 47 74.5
AT5G09900 Arabidopsis thaliana HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 72.3
AT5G64760 Arabidopsis thaliana HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 74.5
BcaC03g13283 Brassica carinata HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 74.5
CAN.G787.28 Capsicum annuum HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 72.3
CsaV3_2G017820 Cucumis sativus L. HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 78.7
Mapoly0173s0007 Marchantia polymorpha HOM05D001185 ORTHO05D003777 7.6e-11 69.7 44 77.3
PSO339G0818 Papaver somniferum HOM05D001185 ORTHO05D003777 7.6e-11 69.7 47 72.3
AL6G20320 Arabidopsis lyrata HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
BcaB01g05557 Brassica carinata HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
C03p04770 Brassica napus HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
C09p67640 Brassica napus HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
BolC3t13011H Brassica oleracea HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
BolC9t59526H Brassica oleracea HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 72.3
Migut.H02459 Erythranthe guttata HOM05D001185 ORTHO05D003777 9.9e-11 69.3 47 74.5
Glyma.05G186600 Glycine max HOM05D001185 ORTHO05D003777 9.9e-11 69.3 45 77.8
Cc07_g16710 Coffea canephora HOM05D001185 ORTHO05D003777 1.3e-10 68.9 47 70.2
DCAR_001393 Daucus carota HOM05D001185 ORTHO05D003777 1.3e-10 68.9 47 70.2
Glyma.08G145200 Glycine max HOM05D001185 ORTHO05D003777 1.3e-10 68.9 45 77.8
Lalb_Chr13g0296321 Lupinus albus HOM05D001185 ORTHO05D003777 1.3e-10 68.9 45 77.8
Pp3c1_21660 Physcomitrium patens HOM05D001185 ORTHO05D003777 1.3e-10 68.9 45 75.6
THA.LOC104799360 Tarenaya hassleriana HOM05D001185 ORTHO05D003777 1.3e-10 68.9 47 70.2
THA.LOC104818471 Tarenaya hassleriana HOM05D001185 ORTHO05D003777 1.3e-10 68.9 47 72.3
ATR1089G042 Amborella trichopoda HOM05D001185 ORTHO05D003777 1.7e-10 68.6 47 74.5
A03p04320 Brassica napus HOM05D001185 ORTHO05D003777 1.7e-10 68.6 47 70.2
BraA03t09776Z Brassica rapa HOM05D001185 ORTHO05D003777 1.7e-10 68.6 47 70.2
Carub.0006s0834 Capsella rubella HOM05D001185 ORTHO05D003777 1.7e-10 68.6 46 73.9
Nitab4.5_0002577g0010 Nicotiana tabacum HOM05D001185 ORTHO05D003777 1.7e-10 68.6 47 72.3
Phvul.002G267700 Phaseolus vulgaris HOM05D001185 ORTHO05D003777 1.7e-10 68.6 45 77.8
Sp6g33510 Schrenkiella parvula HOM05D001185 ORTHO05D003777 1.7e-10 68.6 47 72.3
Eucgr.C01514 Eucalyptus grandis HOM05D001185 ORTHO05D003777 2.2e-10 68.2 47 72.3
Ca_15772_v3 Cicer arietinum L. HOM05D001185 ORTHO05D003777 2.9e-10 67.8 45 77.8
Ca_17672_v3 Cicer arietinum L. HOM05D001185 ORTHO05D003777 2.9e-10 67.8 45 77.8
MBI18_g36191_MAGBIO Magnolia biondii HOM05D001185 ORTHO05D003777 2.9e-10 67.8 47 76.6
Sopen04g022780 Solanum pennellii HOM05D001185 ORTHO05D003777 2.9e-10 67.8 47 74.5
HPP92_024282 Vanilla planifolia HOM05D001185 ORTHO05D003777 2.9e-10 67.8 47 76.6
HPP92_024316 Vanilla planifolia HOM05D001185 ORTHO05D003777 2.9e-10 67.8 47 76.6
Psat7g049320 Pisum sativum HOM05D001185 ORTHO05D003777 3.8e-10 67.4 45 75.6
Solyc04g051370.4 Solanum lycopersicum HOM05D001185 ORTHO05D003777 3.8e-10 67.4 47 74.5
PGSC0003DMG400019701 Solanum tuberosum HOM05D001185 ORTHO05D003777 3.8e-10 67.4 47 74.5
Zm00001eb259300 Zea mays HOM05D001185 ORTHO05D003777 3.8e-10 67.4 47 70.2
Peaxi162Scf00569g00535 Petunia axillaris HOM05D001185 ORTHO05D003777 4.9e-10 67.0 47 72.3
CAN.G452.8 Capsicum annuum HOM05D001185 ORTHO05D003777 6.4e-10 66.6 47 70.2
Medtr8g092450 Medicago truncatula HOM05D001185 ORTHO05D003777 6.4e-10 66.6 45 75.6
Sp2g27830 Schrenkiella parvula HOM05D001185 ORTHO05D003777 8.4e-10 66.2 47 66.0
Pp3c10_9730 Physcomitrium patens HOM05D001185 ORTHO05D003777 1.1e-09 65.9 45 73.3
Medtr8g092390 Medicago truncatula HOM05D001185 ORTHO05D003777 1.4e-09 65.5 45 73.3
Dinv19452 Davidia involucrata HOM05D001185 ORTHO05D003777 1.9e-09 65.1 47 70.2
Lj4g0024278 Lotus japonicus HOM05D001185 ORTHO05D003777 1.9e-09 65.1 45 73.3
Lalb_Chr07g0184681 Lupinus albus HOM05D001185 ORTHO05D003777 2.4e-09 64.7 45 71.1
Phvul.009G138000 Phaseolus vulgaris HOM05D001185 ORTHO05D003777 2.4e-09 64.7 46 65.2
TPR.G2195 Trifolium pratense HOM05D001185 ORTHO05D003777 3.2e-09 64.3 43 76.7
Nn1g04888 Nelumbo nucifera HOM05D001185 ORTHO05D003777 5.5e-09 63.5 33 90.9
SEGI_19131 Sequoiadendron giganteum HOM05D001185 ORTHO05D014142 5.5e-09 63.5 47 68.1
SEGI_31389 Sequoiadendron giganteum HOM05D001185 ORTHO05D003777 5.5e-09 63.5 47 68.1
Lj4A859T54 Lonicera japonica HOM05D001185 ORTHO05D003777 7.1e-09 63.2 47 72.3
Rhsim10G0145000 Rhododendron simsii HOM05D001185 ORTHO05D003777 7.1e-09 63.2 47 72.3
TPR.G30457 Trifolium pratense HOM05D001185 ORTHO05D003777 7.1e-09 63.2 45 71.1
VMungo1309G1478 Vigna mungo HOM05D001185 ORTHO05D003777 2.1e-08 61.6 47 61.7
HPP92_006177 Vanilla planifolia HOM05D001185 ORTHO05D003777 3.5e-08 60.8 44 72.7
SMO358G0708 Selaginella moellendorffii HOM05D001185 ORTHO05D003777 2.3e-07 58.2 45 62.2
Nitab4.5_0001728g0070 Nicotiana tabacum HOM05D001185 ORTHO05D003777 5.1e-07 57.0 66 51.5
MCO16G073 Micromonas commoda HOM05D001185 ORTHO05D003777 1.1e-06 55.8 44 59.1
arahy.Tifrunner.gnm1.ann1.6XFQ3U Arachis hypogaea HOM05D001185 ORTHO05D003777 1.9e-06 55.1 35 77.1
Glyma.06G148300 Glycine max HOM05D001185 ORTHO05D003777 2.5e-06 54.7 37 67.6
CBR_g4871 Chara braunii HOM05D001185 ORTHO05D003777 4.3e-06 53.9 38 63.2
Glyma.04G217500 Glycine max HOM05D001185 ORTHO05D003777 4.3e-06 53.9 36 66.7
PRCOL_00002378 Prasinoderma coloniale HOM05D001185 ORTHO05D003777 5.6e-06 53.5 44 61.4


User provided reference genes

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