Gene: Pp3c1_21660
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c1_21660
- Transcript Identifier Pp3c1_21660V3.1
- Gene Type Coding gene
- Location Chr01 : 16280461-16284076 : negative
Gene Family Information
- ID HOM05D001185
- #Genes/#Species 526/100
- Phylogenetic origin
- ID ORTHO05D003777
- #Genes/#Species 205/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c1_21660V3.1
- pacid 32969395
- alias Phpat.001G082200
- alias Phypa_170720
- alias Pp1s257_89V6
- uniprot A0A2K1L952
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043161 | IBA | GOA Database | proteasome-mediated ubiquitin-dependent protein catabolic process | |
| GO:0007275 | ISO | PLAZA Integrative Orthology | multicellular organism development | AT5G09900 |
| GO:0030163 | ISO | PLAZA Integrative Orthology | protein catabolic process | AT5G64760 |
| GO:0006511 | ISO | PLAZA Integrative Orthology | ubiquitin-dependent protein catabolic process | AT5G09900 |
| GO:0006412 | ISO | PLAZA Homology (enrichment) | translation | HOM05D001185 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | ISO | PLAZA Homology (enrichment) | structural constituent of ribosome | HOM05D001185 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031595 | IBA | GOA Database | nuclear proteasome complex | |
| GO:0008541 | IBA | GOA Database | proteasome regulatory particle, lid subcomplex | |
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G09900 |
| GO:0000502 | ISO | PLAZA Integrative Orthology | proteasome complex | AT5G09900 |
| GO:0005840 | ISO | PLAZA Homology (enrichment) | ribosome | HOM05D001185 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040896 | 26S proteasome regulatory subunit RPN5, C-terminal domain |
| IPR040134 | 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4 |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR000717 | Proteasome component (PCI) domain |
| Mapman id | Description |
|---|---|
| 19.2.5.2.2.4 | Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5 |