Gene: AT5G09900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G09900
  • Transcript Identifier AT5G09900.1
  • Gene Type Coding gene
  • Location Chr5 : 3089462-3092434 : negative

Gene Family Information

  • ID HOM05D001185
  • #Genes/#Species 526/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G09900.1
  • symbol EMB2107
  • Alias MSA,MARIPOSA,RPN5A,REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A
  • full_name EMBRYO DEFECTIVE 2107
  • uniprot Q9FIB6

Descriptions

  • Description 26S proteasome regulatory subunit, putative (RPN5)
  • Computational description EMBRYO DEFECTIVE 2107 (EMB2107); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 836 Blast hits to 828 proteins in 231 species: Archae - 0; Bacteria - 6; Metazoa - 300; Fungi - 280; Plants - 112; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D001185
GO:0043161
IBA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0007275
IMP
Gene Ontologymulticellular organism development1
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process2
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D001185
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm1
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D001185
GO:0008541
IBA
GOA Databaseproteasome regulatory particle, lid subcomplex
GO:0031595
IBA
GOA Databasenuclear proteasome complex
GO:0000502
IEA
GOA Databaseproteasome complex
GO:0000502
IDA
Gene Ontologyproteasome complex3
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0005886
HDA
Gene Ontologyplasma membrane4
GO:0009506
HDA
Gene Ontologyplasmodesma5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR000717 Proteasome component (PCI) domain
IPR040896 26S proteasome regulatory subunit RPN5, C-terminal domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR040134 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4
Mapman id Description
19.2.5.2.2.4 Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5