Gene: Solyc04g012040.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g012040.3
  • Transcript Identifier Solyc04g012040.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 4402502-4410413 : positive

Gene Family Information

  • ID HOM05D001185
  • #Genes/#Species 526/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g012040.3.1
  • uniprot A0A3Q7FZG4
  • gene_id Solyc04g012040

Descriptions

  • Description 26S proteasome non-ATPase regulatory subunit 12-like protein (AHRD V3.3 *** A0A2K3MWS1_TRIPR)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IBA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0007275
ISO
PLAZA Integrative Orthologymulticellular organism development AT5G09900
GO:0030163
ISO
PLAZA Integrative Orthologyprotein catabolic process AT5G64760
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G09900
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D001185

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D001185

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0008541
IBA
GOA Databaseproteasome regulatory particle, lid subcomplex
GO:0031595
IBA
GOA Databasenuclear proteasome complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G09900
GO:0000502
ISO
PLAZA Integrative Orthologyproteasome complex AT5G09900
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D001185

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR040134 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR000717 Proteasome component (PCI) domain
IPR040896 26S proteasome regulatory subunit RPN5, C-terminal domain
Mapman id Description
19.2.5.2.2.4 Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5