Gene: Sopen04g022780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g022780
  • Transcript Identifier Sopen04g022780.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 61341316-61349685 : negative

Gene Family Information

  • ID HOM05D001185
  • #Genes/#Species 526/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g022780.1

Descriptions

  • Description Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. | EMBRYO DEFECTIVE 2107 (EMB2107) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, embryo development ending in seed dormancy | LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007275
ISO
PLAZA Integrative Orthologymulticellular organism development AT5G09900
GO:0030163
ISO
PLAZA Integrative Orthologyprotein catabolic process AT5G64760
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G09900
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D001185

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D001185

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G09900
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G09900
GO:0000502
ISO
PLAZA Integrative Orthologyproteasome complex AT5G09900
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D001185

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040134 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4
IPR036390 Winged helix DNA-binding domain superfamily
IPR000717 Proteasome component (PCI) domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR040896 26S proteasome regulatory subunit RPN5, C-terminal domain
Mapman id Description
19.2.5.2.2.4 Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5