Gene: AT5G64760
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G64760
- Transcript Identifier AT5G64760.1
- Gene Type Coding gene
- Location Chr5 : 25894027-25896445 : negative
Gene Family Information
- ID HOM05D001185
- #Genes/#Species 526/100
- Phylogenetic origin
- ID ORTHO05D003777
- #Genes/#Species 205/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G64760.1
- symbol RPN5B
- uniprot Q8VWK0
Descriptions
- Description regulatory particle non-ATPase subunit 5B
- Computational description regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.1); Has 840 Blast hits to 830 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | ISO | PLAZA Homology (enrichment) | translation | HOM05D001185 |
| GO:0043161 | IBA | Gene Ontology | proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| GO:0007275 | IMP | Gene Ontology | multicellular organism development | 2 |
| GO:0030163 | TAS | Gene Ontology | protein catabolic process | 3 |
| GO:0006511 | TAS | Gene Ontology | ubiquitin-dependent protein catabolic process | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | ISO | PLAZA Homology (enrichment) | structural constituent of ribosome | HOM05D001185 |
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008541 | IBA | Gene Ontology | proteasome regulatory particle, lid subcomplex | 1 |
| GO:0005840 | ISO | PLAZA Homology (enrichment) | ribosome | HOM05D001185 |
| GO:0000502 | IEA | GOA Database | proteasome complex | |
| GO:0000502 | IDA | Gene Ontology | proteasome complex | 5 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM TAS | Gene Ontology | nucleus | 2 3 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA IBA | Gene Ontology | cytoplasm | 1 2 |
| GO:0031595 | IBA | Gene Ontology | nuclear proteasome complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040134 | 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4 |
| IPR000717 | Proteasome component (PCI) domain |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR040896 | 26S proteasome regulatory subunit RPN5, C-terminal domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 19.2.5.2.2.4 | Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN5 |