Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-96 356.7 172 100.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-86 322.4 165 93.9
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-83 312.4 165 90.3
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.5e-79 297.0 164 86.6
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.5e-79 297.0 164 86.6
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.6e-78 296.2 164 85.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.2e-78 294.3 164 84.8
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.1e-77 293.5 164 84.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 6.8e-77 290.8 165 86.1
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.4e-74 283.1 157 84.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 5.4e-74 281.2 158 86.7
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 9.9e-68 260.4 151 84.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.2e-60 236.9 158 69.0
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.4e-58 229.9 157 71.3
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-58 229.6 158 69.0
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-57 226.5 158 67.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.0e-57 224.6 158 67.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.9e-56 221.9 138 73.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 6.6e-56 221.1 158 67.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.9e-55 219.5 158 66.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.9e-55 219.5 155 65.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.5e-55 219.2 155 63.2
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.5e-55 219.2 165 61.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.3e-55 218.8 156 67.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 4.3e-55 218.4 158 65.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 5.6e-55 218.0 157 65.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.3e-54 216.9 155 65.2
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.8e-53 213.0 157 65.6
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.1e-53 212.2 158 63.9
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-52 209.9 158 61.4
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.5e-52 209.9 155 63.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-52 209.1 159 62.3
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-52 209.1 159 62.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.5e-52 208.4 158 65.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.5e-52 208.4 159 61.0
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 5.8e-52 208.0 158 62.7
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 5.8e-52 208.0 160 63.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 7.6e-52 207.6 165 60.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 9.9e-52 207.2 160 61.9
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.7e-51 206.5 159 59.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-51 206.5 158 60.1
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.8e-51 205.3 155 60.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.4e-50 203.4 159 59.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.4e-50 202.6 154 61.7
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 5.4e-50 201.4 158 60.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.1e-50 201.1 157 60.5
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 7.1e-50 201.1 166 57.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.2e-49 200.3 157 62.4
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.2e-49 200.3 165 57.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.7e-49 199.1 159 61.0
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 4.6e-49 198.4 154 63.0
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.0e-49 198.0 158 62.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.0e-49 198.0 158 62.0
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 6.0e-49 198.0 155 63.2
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 6.0e-49 198.0 161 58.4
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.0e-48 197.2 184 54.9
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.0e-48 197.2 155 59.4
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.3e-48 196.8 158 58.9
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.3e-48 196.1 157 62.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.9e-48 195.3 154 59.7
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.9e-48 195.3 167 58.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.1e-48 194.9 155 61.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.1e-48 194.9 155 62.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 6.7e-48 194.5 157 61.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 8.7e-48 194.1 155 62.6
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 8.7e-48 194.1 159 61.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.1e-47 193.7 157 62.4
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.5e-47 193.4 152 59.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.9e-47 193.0 157 59.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 2.5e-47 192.6 155 60.0
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.3e-47 192.2 160 59.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.3e-47 192.2 158 57.6
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.3e-47 191.8 171 57.3
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 5.6e-47 191.4 155 58.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 7.4e-47 191.0 158 55.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 7.4e-47 191.0 157 59.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 9.6e-47 190.7 155 59.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 9.6e-47 190.7 158 55.7
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.6e-46 189.9 159 57.2
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.1e-46 189.5 160 59.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.8e-46 189.1 167 58.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.8e-46 189.1 167 56.9
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.8e-46 189.1 167 56.9
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 3.7e-46 188.7 159 59.1
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.8e-46 188.3 157 56.1
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.8e-46 188.3 157 56.1
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.2e-46 188.0 158 58.9
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 6.2e-46 188.0 167 57.5
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 6.2e-46 188.0 167 57.5
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 8.1e-46 187.6 157 56.1
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-45 187.2 156 60.3
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-45 187.2 154 57.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.1e-45 187.2 157 56.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-45 186.8 157 56.1
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.8e-45 186.4 157 55.4
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.8e-45 186.4 158 57.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.4e-45 186.0 160 57.5
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.4e-45 186.0 155 58.1
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.4e-45 186.0 182 54.9
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.1e-45 185.7 159 57.2
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.1e-45 185.7 155 58.1
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.0e-45 185.3 157 55.4
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.0e-45 185.3 159 57.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 4.0e-45 185.3 157 55.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.3e-45 184.9 156 59.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 5.3e-45 184.9 160 56.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.3e-45 184.9 155 58.1
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.3e-45 184.9 155 58.1
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.3e-45 184.9 159 55.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 5.3e-45 184.9 157 59.2
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 9.0e-45 184.1 167 56.9
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.5e-44 183.3 160 56.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.5e-44 183.3 165 57.6
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.0e-44 183.0 155 58.7
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.0e-44 183.0 156 57.1
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.0e-44 183.0 171 52.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.4e-44 182.2 159 57.2
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.4e-44 182.2 159 57.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.5e-44 181.8 155 57.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.8e-44 181.4 155 55.5
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-43 180.3 127 65.4
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.2e-43 179.5 160 55.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-43 179.5 126 63.5
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 4.9e-43 178.3 158 53.8
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.9e-43 178.3 159 54.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 6.4e-43 177.9 159 56.0
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.4e-43 177.6 105 77.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-42 177.2 155 55.5
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-42 177.2 155 55.5
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.2e-42 175.3 159 56.0
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.2e-42 175.3 159 56.0
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 4.2e-42 175.3 160 53.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 5.5e-42 174.9 159 55.3
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 5.5e-42 174.9 123 65.9
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.1e-42 174.5 158 54.4
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.3e-42 174.1 158 53.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 9.3e-42 174.1 146 62.3
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-41 173.3 155 54.8
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.1e-41 172.9 130 62.3
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 7.9e-41 171.0 162 55.6
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.9e-40 168.7 138 58.7
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.5e-39 166.0 155 51.0
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.5e-39 166.0 161 52.8
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.5e-39 166.0 84 90.5
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.3e-39 165.6 160 51.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.3e-39 165.2 157 51.6
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 4.3e-39 165.2 160 55.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-38 162.9 162 51.2
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.8e-38 162.5 125 64.8
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.7e-38 162.2 160 50.0
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.0e-37 158.7 158 53.2
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 5.3e-37 158.3 154 51.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.0e-35 154.1 157 49.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 6.5e-35 151.4 172 41.9
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.4e-34 150.2 159 49.7
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.9e-32 142.1 168 45.2
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 8.7e-32 141.0 159 47.8
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 8.2e-30 134.4 160 41.9
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.2e-30 134.4 100 61.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.8e-29 133.3 101 64.4
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.2e-28 130.6 116 57.8
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.4e-28 129.0 120 54.2
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.7e-27 126.7 97 57.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.1e-24 115.2 83 62.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-23 113.2 150 43.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.3e-23 112.1 159 42.1
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 6.3e-22 108.2 83 51.8
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.4e-21 107.1 145 42.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.2e-20 104.0 163 35.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.2e-20 104.0 74 66.2
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 6.5e-19 98.2 188 32.4
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 7.9e-17 91.3 123 40.7
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.8e-14 82.8 138 36.2
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.9e-10 70.1 54 61.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.8e-08 63.5 175 28.6
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.9e-08 62.4 53 52.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 4.8e-06 55.5 32 71.9


User provided reference genes

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